Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL3A1P02461 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL3A1P02461 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL3A1P02461 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL3A1P02461 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
COL3A1P02461 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL3A1P02461 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC19.54■□□□□ 0.72
COL3A1P02461 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL3A1P02461 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL3A1P02461 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL3A1P02461 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC19.54■□□□□ 0.72
COL3A1P02461 MYADML-201ENST00000474610 2147 ntBASIC19.54■□□□□ 0.72
COL3A1P02461 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL3A1P02461 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL3A1P02461 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL3A1P02461 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL3A1P02461 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL3A1P02461 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC19.54■□□□□ 0.72
COL3A1P02461 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL3A1P02461 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL3A1P02461 AC005077.2-201ENST00000449786 690 ntBASIC19.54■□□□□ 0.72
COL3A1P02461 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC19.54■□□□□ 0.72
COL3A1P02461 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
COL3A1P02461 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC19.54■□□□□ 0.72
COL3A1P02461 MIR3619-201ENST00000579667 83 ntBASIC19.54■□□□□ 0.72
COL3A1P02461 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL3A1P02461 AC244452.3-201ENST00000636814 210 ntBASIC19.54■□□□□ 0.72
COL3A1P02461 AC138627.1-207ENST00000641560 1006 ntBASIC19.54■□□□□ 0.72
COL3A1P02461 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
COL3A1P02461 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL3A1P02461 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
COL3A1P02461 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL3A1P02461 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL3A1P02461 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL3A1P02461 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
COL3A1P02461 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL3A1P02461 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
COL3A1P02461 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.53■□□□□ 0.72
COL3A1P02461 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL3A1P02461 AGGF1P1-201ENST00000509500 2073 ntBASIC19.53■□□□□ 0.72
COL3A1P02461 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL3A1P02461 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC19.53■□□□□ 0.72
COL3A1P02461 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
COL3A1P02461 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL3A1P02461 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC19.53■□□□□ 0.72
COL3A1P02461 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL3A1P02461 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL3A1P02461 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
COL3A1P02461 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL3A1P02461 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL3A1P02461 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC19.53■□□□□ 0.72
COL3A1P02461 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC19.53■□□□□ 0.72
COL3A1P02461 NEU3-202ENST00000526068 431 ntTSL 2 BASIC19.53■□□□□ 0.72
COL3A1P02461 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC19.53■□□□□ 0.72
COL3A1P02461 RERG-205ENST00000537647 935 ntTSL 2 BASIC19.53■□□□□ 0.72
COL3A1P02461 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC19.53■□□□□ 0.72
COL3A1P02461 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC19.53■□□□□ 0.72
COL3A1P02461 AC009884.2-201ENST00000603110 324 ntBASIC19.53■□□□□ 0.72
COL3A1P02461 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC19.53■□□□□ 0.72
COL3A1P02461 AP001505.2-201ENST00000616815 443 ntBASIC19.53■□□□□ 0.72
COL3A1P02461 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC19.53■□□□□ 0.72
COL3A1P02461 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC19.53■□□□□ 0.72
COL3A1P02461 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL3A1P02461 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL3A1P02461 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL3A1P02461 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL3A1P02461 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC19.52■□□□□ 0.72
COL3A1P02461 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL3A1P02461 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL3A1P02461 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL3A1P02461 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.72
COL3A1P02461 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
COL3A1P02461 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL3A1P02461 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL3A1P02461 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL3A1P02461 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL3A1P02461 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC19.52■□□□□ 0.72
COL3A1P02461 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL3A1P02461 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.72
COL3A1P02461 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL3A1P02461 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL3A1P02461 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL3A1P02461 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL3A1P02461 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC19.52■□□□□ 0.72
COL3A1P02461 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC19.52■□□□□ 0.72
COL3A1P02461 KRTAP19-9P-201ENST00000421795 191 ntBASIC19.52■□□□□ 0.72
COL3A1P02461 ISCA2P1-201ENST00000425548 448 ntBASIC19.52■□□□□ 0.72
COL3A1P02461 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC19.52■□□□□ 0.72
COL3A1P02461 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC19.52■□□□□ 0.72
COL3A1P02461 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC19.52■□□□□ 0.72
COL3A1P02461 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL3A1P02461 AC105129.2-201ENST00000559536 390 ntBASIC19.52■□□□□ 0.72
COL3A1P02461 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC19.52■□□□□ 0.72
COL3A1P02461 RN7SL163P-201ENST00000583100 276 ntBASIC19.52■□□□□ 0.72
COL3A1P02461 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
COL3A1P02461 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC19.52■□□□□ 0.72
COL3A1P02461 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.72
COL3A1P02461 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL3A1P02461 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
COL3A1P02461 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms