Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC21.44■■□□□ 1.02
MSH5O43196 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MSH5O43196 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MSH5O43196 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
MSH5O43196 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
MSH5O43196 MFSD8-220ENST00000641243 1422 ntBASIC21.44■■□□□ 1.02
MSH5O43196 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MSH5O43196 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MSH5O43196 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH5O43196 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MSH5O43196 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
MSH5O43196 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MSH5O43196 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH5O43196 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH5O43196 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC21.43■■□□□ 1.02
MSH5O43196 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH5O43196 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH5O43196 SLC25A1P3-201ENST00000395415 828 ntBASIC21.43■■□□□ 1.02
MSH5O43196 DGCR5-201ENST00000399539 862 ntBASIC21.43■■□□□ 1.02
MSH5O43196 AP001596.1-203ENST00000421771 1078 ntTSL 3 BASIC21.43■■□□□ 1.02
MSH5O43196 AL049651.1-201ENST00000440798 719 ntTSL 5 BASIC21.43■■□□□ 1.02
MSH5O43196 MTND1P33-201ENST00000446251 917 ntBASIC21.43■■□□□ 1.02
MSH5O43196 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC21.43■■□□□ 1.02
MSH5O43196 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC21.43■■□□□ 1.02
MSH5O43196 SATB1-217ENST00000493952 626 ntTSL 3 BASIC21.43■■□□□ 1.02
MSH5O43196 AC010834.1-201ENST00000517998 696 ntTSL 2 BASIC21.43■■□□□ 1.02
MSH5O43196 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC21.43■■□□□ 1.02
MSH5O43196 API5-211ENST00000534695 560 ntTSL 5 BASIC21.43■■□□□ 1.02
MSH5O43196 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
MSH5O43196 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MSH5O43196 NAA38-206ENST00000576384 424 ntTSL 2 BASIC21.43■■□□□ 1.02
MSH5O43196 AC132938.2-201ENST00000579188 680 ntBASIC21.43■■□□□ 1.02
MSH5O43196 MTATP6P3-201ENST00000581686 676 ntBASIC21.43■■□□□ 1.02
MSH5O43196 KC6-205ENST00000599934 556 ntTSL 4 BASIC21.43■■□□□ 1.02
MSH5O43196 HULC.1-201ENST00000612720 240 ntBASIC21.43■■□□□ 1.02
MSH5O43196 AC126474.1-201ENST00000623555 1293 ntBASIC21.43■■□□□ 1.02
MSH5O43196 Z98043.1-201ENST00000624123 339 ntBASIC21.43■■□□□ 1.02
MSH5O43196 AL591163.1-201ENST00000641757 987 ntBASIC21.43■■□□□ 1.02
MSH5O43196 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH5O43196 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC21.43■■□□□ 1.02
MSH5O43196 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC21.43■■□□□ 1.02
MSH5O43196 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MSH5O43196 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MSH5O43196 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH5O43196 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH5O43196 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC21.43■■□□□ 1.02
MSH5O43196 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
MSH5O43196 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MSH5O43196 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MSH5O43196 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH5O43196 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC21.43■■□□□ 1.02
MSH5O43196 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH5O43196 LINC02012-201ENST00000608206 1725 ntBASIC21.43■■□□□ 1.02
MSH5O43196 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH5O43196 ALOX12P2-203ENST00000570921 1945 ntBASIC21.43■■□□□ 1.02
MSH5O43196 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MSH5O43196 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH5O43196 POLL-206ENST00000370172 2308 ntTSL 2 BASIC21.43■■□□□ 1.02
MSH5O43196 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
MSH5O43196 CYP3A43-202ENST00000312017 1349 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
MSH5O43196 AP000487.2-201ENST00000324630 394 ntTSL 3 BASIC21.42■■□□□ 1.02
MSH5O43196 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MSH5O43196 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MSH5O43196 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
MSH5O43196 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
MSH5O43196 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MSH5O43196 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MSH5O43196 MXI1-205ENST00000393134 889 ntTSL 2 BASIC21.42■■□□□ 1.02
MSH5O43196 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
MSH5O43196 GNAT3-201ENST00000398291 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MSH5O43196 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC21.42■■□□□ 1.02
MSH5O43196 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC21.42■■□□□ 1.02
MSH5O43196 AC011242.1-201ENST00000433596 1158 ntBASIC21.42■■□□□ 1.02
MSH5O43196 AL121601.2-201ENST00000438019 707 ntBASIC21.42■■□□□ 1.02
MSH5O43196 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC21.42■■□□□ 1.02
MSH5O43196 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC21.42■■□□□ 1.02
MSH5O43196 AC018717.1-201ENST00000457712 1505 ntBASIC21.42■■□□□ 1.02
MSH5O43196 ACA64.2-201ENST00000459014 129 ntBASIC21.42■■□□□ 1.02
MSH5O43196 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC21.42■■□□□ 1.02
MSH5O43196 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC21.42■■□□□ 1.02
MSH5O43196 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC21.42■■□□□ 1.02
MSH5O43196 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC21.42■■□□□ 1.02
MSH5O43196 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC21.42■■□□□ 1.02
MSH5O43196 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC21.42■■□□□ 1.02
MSH5O43196 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC21.42■■□□□ 1.02
MSH5O43196 AP4S1-206ENST00000554609 1012 ntTSL 5 BASIC21.42■■□□□ 1.02
MSH5O43196 AC103740.2-201ENST00000557900 1225 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
MSH5O43196 AC239868.3-201ENST00000577853 1234 ntBASIC21.42■■□□□ 1.02
MSH5O43196 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC21.42■■□□□ 1.02
MSH5O43196 AL133467.4-201ENST00000602953 725 ntBASIC21.42■■□□□ 1.02
MSH5O43196 AC008738.7-201ENST00000609744 511 ntBASIC21.42■■□□□ 1.02
MSH5O43196 AL139327.4-201ENST00000612362 153 ntBASIC21.42■■□□□ 1.02
MSH5O43196 AP3S2-216ENST00000617003 1561 ntBASIC21.42■■□□□ 1.02
MSH5O43196 AC007742.2-201ENST00000618226 398 ntBASIC21.42■■□□□ 1.02
MSH5O43196 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC21.42■■□□□ 1.02
MSH5O43196 AC046158.4-201ENST00000623121 1347 ntBASIC21.42■■□□□ 1.02
MSH5O43196 AL121594.5-201ENST00000631724 573 ntBASIC21.42■■□□□ 1.02
MSH5O43196 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MSH5O43196 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
MSH5O43196 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms