Protein–RNA interactions for Protein: Q9Y5X4

NR2E3, Photoreceptor-specific nuclear receptor, humanhuman

Predictions only

Length 410 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR2E3Q9Y5X4 DUX4L8-201ENST00000629013 1275 ntBASIC25.74■■□□□ 1.71
NR2E3Q9Y5X4 DUX4L3-201ENST00000630187 1275 ntBASIC25.74■■□□□ 1.71
NR2E3Q9Y5X4 DUX4L7-201ENST00000630678 1275 ntBASIC25.74■■□□□ 1.71
NR2E3Q9Y5X4 DUX4L5-201ENST00000630834 1275 ntBASIC25.74■■□□□ 1.71
NR2E3Q9Y5X4 SNAI3-AS1-204ENST00000567997 2048 ntBASIC25.74■■□□□ 1.71
NR2E3Q9Y5X4 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
NR2E3Q9Y5X4 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC25.73■■□□□ 1.71
NR2E3Q9Y5X4 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC25.73■■□□□ 1.71
NR2E3Q9Y5X4 GXYLT1P2-201ENST00000433312 1230 ntBASIC25.73■■□□□ 1.71
NR2E3Q9Y5X4 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC25.73■■□□□ 1.71
NR2E3Q9Y5X4 AC099791.2-201ENST00000605725 427 ntBASIC25.73■■□□□ 1.71
NR2E3Q9Y5X4 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC25.73■■□□□ 1.71
NR2E3Q9Y5X4 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
NR2E3Q9Y5X4 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
NR2E3Q9Y5X4 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC25.73■■□□□ 1.71
NR2E3Q9Y5X4 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
NR2E3Q9Y5X4 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC25.72■■□□□ 1.71
NR2E3Q9Y5X4 GRAMD4P2-201ENST00000423297 1097 ntBASIC25.72■■□□□ 1.71
NR2E3Q9Y5X4 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC25.72■■□□□ 1.71
NR2E3Q9Y5X4 AC233992.3-201ENST00000607491 485 ntBASIC25.72■■□□□ 1.71
NR2E3Q9Y5X4 AL031602.1-201ENST00000633169 911 ntBASIC25.72■■□□□ 1.71
NR2E3Q9Y5X4 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
NR2E3Q9Y5X4 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
NR2E3Q9Y5X4 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC25.71■■□□□ 1.71
NR2E3Q9Y5X4 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC25.71■■□□□ 1.71
NR2E3Q9Y5X4 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
NR2E3Q9Y5X4 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
NR2E3Q9Y5X4 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
NR2E3Q9Y5X4 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC25.71■■□□□ 1.71
NR2E3Q9Y5X4 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC25.71■■□□□ 1.71
NR2E3Q9Y5X4 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC25.71■■□□□ 1.71
NR2E3Q9Y5X4 SHF-208ENST00000560734 1731 ntTSL 3 BASIC25.71■■□□□ 1.71
NR2E3Q9Y5X4 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
NR2E3Q9Y5X4 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
NR2E3Q9Y5X4 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.71
NR2E3Q9Y5X4 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC25.7■■□□□ 1.7
NR2E3Q9Y5X4 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
NR2E3Q9Y5X4 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC25.7■■□□□ 1.7
NR2E3Q9Y5X4 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
NR2E3Q9Y5X4 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
NR2E3Q9Y5X4 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC25.7■■□□□ 1.7
NR2E3Q9Y5X4 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC25.69■■□□□ 1.7
NR2E3Q9Y5X4 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC25.69■■□□□ 1.7
NR2E3Q9Y5X4 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC25.69■■□□□ 1.7
NR2E3Q9Y5X4 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
NR2E3Q9Y5X4 PKM-203ENST00000389093 2279 ntTSL 5 BASIC25.69■■□□□ 1.7
NR2E3Q9Y5X4 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC25.69■■□□□ 1.7
NR2E3Q9Y5X4 RAB43-208ENST00000615093 783 ntTSL 5 BASIC25.69■■□□□ 1.7
NR2E3Q9Y5X4 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC25.69■■□□□ 1.7
NR2E3Q9Y5X4 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC25.69■■□□□ 1.7
NR2E3Q9Y5X4 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC25.69■■□□□ 1.7
NR2E3Q9Y5X4 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC25.68■■□□□ 1.7
NR2E3Q9Y5X4 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
NR2E3Q9Y5X4 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC25.68■■□□□ 1.7
NR2E3Q9Y5X4 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC25.68■■□□□ 1.7
NR2E3Q9Y5X4 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
NR2E3Q9Y5X4 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
NR2E3Q9Y5X4 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
NR2E3Q9Y5X4 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
NR2E3Q9Y5X4 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
NR2E3Q9Y5X4 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
NR2E3Q9Y5X4 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
NR2E3Q9Y5X4 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
NR2E3Q9Y5X4 NME4-202ENST00000382940 766 ntTSL 3 BASIC25.67■■□□□ 1.7
NR2E3Q9Y5X4 HES6-206ENST00000409574 738 ntTSL 2 BASIC25.67■■□□□ 1.7
NR2E3Q9Y5X4 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC25.67■■□□□ 1.7
NR2E3Q9Y5X4 NME4-211ENST00000620944 1193 ntTSL 2 BASIC25.67■■□□□ 1.7
NR2E3Q9Y5X4 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC25.67■■□□□ 1.7
NR2E3Q9Y5X4 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
NR2E3Q9Y5X4 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC25.67■■□□□ 1.7
NR2E3Q9Y5X4 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
NR2E3Q9Y5X4 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
NR2E3Q9Y5X4 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC25.66■■□□□ 1.7
NR2E3Q9Y5X4 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC25.66■■□□□ 1.7
NR2E3Q9Y5X4 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
NR2E3Q9Y5X4 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
NR2E3Q9Y5X4 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC25.66■■□□□ 1.7
NR2E3Q9Y5X4 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
NR2E3Q9Y5X4 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
NR2E3Q9Y5X4 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
NR2E3Q9Y5X4 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC25.66■■□□□ 1.7
NR2E3Q9Y5X4 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC25.66■■□□□ 1.7
NR2E3Q9Y5X4 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
NR2E3Q9Y5X4 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC25.66■■□□□ 1.7
NR2E3Q9Y5X4 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC25.66■■□□□ 1.7
NR2E3Q9Y5X4 AC136469.2-201ENST00000623944 1028 ntBASIC25.66■■□□□ 1.7
NR2E3Q9Y5X4 AC245100.8-202ENST00000629247 1058 ntBASIC25.66■■□□□ 1.7
NR2E3Q9Y5X4 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
NR2E3Q9Y5X4 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
NR2E3Q9Y5X4 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC25.65■■□□□ 1.7
NR2E3Q9Y5X4 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC25.65■■□□□ 1.7
NR2E3Q9Y5X4 BX842568.3-201ENST00000418104 571 ntBASIC25.65■■□□□ 1.7
NR2E3Q9Y5X4 AC090877.2-201ENST00000558441 1738 ntBASIC25.65■■□□□ 1.7
NR2E3Q9Y5X4 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
NR2E3Q9Y5X4 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.7
NR2E3Q9Y5X4 ABHD17AP1-201ENST00000358206 933 ntBASIC25.64■■□□□ 1.7
NR2E3Q9Y5X4 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC25.64■■□□□ 1.7
NR2E3Q9Y5X4 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC25.64■■□□□ 1.7
NR2E3Q9Y5X4 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC25.64■■□□□ 1.7
NR2E3Q9Y5X4 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC25.64■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms