Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SHANK1Q9Y566 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SHANK1Q9Y566 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHANK1Q9Y566 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHANK1Q9Y566 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SHANK1Q9Y566 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SHANK1Q9Y566 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.9■□□□□ 0.94
SHANK1Q9Y566 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.9■□□□□ 0.94
SHANK1Q9Y566 AC005703.6-201ENST00000623265 1329 ntBASIC20.89■□□□□ 0.94
SHANK1Q9Y566 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.89■□□□□ 0.94
SHANK1Q9Y566 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.94
SHANK1Q9Y566 IKBKGP1-201ENST00000612193 1073 ntBASIC20.89■□□□□ 0.94
SHANK1Q9Y566 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC20.89■□□□□ 0.93
SHANK1Q9Y566 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.89■□□□□ 0.93
SHANK1Q9Y566 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SHANK1Q9Y566 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC20.89■□□□□ 0.93
SHANK1Q9Y566 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.89■□□□□ 0.93
SHANK1Q9Y566 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SHANK1Q9Y566 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHANK1Q9Y566 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
SHANK1Q9Y566 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHANK1Q9Y566 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHANK1Q9Y566 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHANK1Q9Y566 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SHANK1Q9Y566 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHANK1Q9Y566 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
SHANK1Q9Y566 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.87■□□□□ 0.93
SHANK1Q9Y566 AC011298.3-201ENST00000615796 283 ntBASIC20.87■□□□□ 0.93
SHANK1Q9Y566 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
SHANK1Q9Y566 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
SHANK1Q9Y566 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SHANK1Q9Y566 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.86■□□□□ 0.93
SHANK1Q9Y566 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHANK1Q9Y566 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHANK1Q9Y566 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SHANK1Q9Y566 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHANK1Q9Y566 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHANK1Q9Y566 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.85■□□□□ 0.93
SHANK1Q9Y566 IRS3P-201ENST00000223076 1006 ntBASIC20.85■□□□□ 0.93
SHANK1Q9Y566 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHANK1Q9Y566 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SHANK1Q9Y566 AC027682.1-201ENST00000562846 899 ntBASIC20.85■□□□□ 0.93
SHANK1Q9Y566 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHANK1Q9Y566 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHANK1Q9Y566 AC004448.1-201ENST00000458332 883 ntBASIC20.85■□□□□ 0.93
SHANK1Q9Y566 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.85■□□□□ 0.93
SHANK1Q9Y566 RARRES2P11-201ENST00000635158 484 ntBASIC20.85■□□□□ 0.93
SHANK1Q9Y566 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHANK1Q9Y566 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHANK1Q9Y566 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHANK1Q9Y566 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC20.84■□□□□ 0.93
SHANK1Q9Y566 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.84■□□□□ 0.93
SHANK1Q9Y566 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHANK1Q9Y566 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SHANK1Q9Y566 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.83■□□□□ 0.93
SHANK1Q9Y566 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.83■□□□□ 0.93
SHANK1Q9Y566 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SHANK1Q9Y566 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
SHANK1Q9Y566 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SHANK1Q9Y566 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.83■□□□□ 0.92
SHANK1Q9Y566 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
SHANK1Q9Y566 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SHANK1Q9Y566 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.83■□□□□ 0.92
SHANK1Q9Y566 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
SHANK1Q9Y566 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.82■□□□□ 0.92
SHANK1Q9Y566 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SHANK1Q9Y566 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.82■□□□□ 0.92
SHANK1Q9Y566 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.82■□□□□ 0.92
SHANK1Q9Y566 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.82■□□□□ 0.92
SHANK1Q9Y566 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.82■□□□□ 0.92
SHANK1Q9Y566 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SHANK1Q9Y566 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHANK1Q9Y566 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.82■□□□□ 0.92
SHANK1Q9Y566 AC096887.2-201ENST00000623443 1957 ntBASIC20.82■□□□□ 0.92
SHANK1Q9Y566 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SHANK1Q9Y566 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.82■□□□□ 0.92
SHANK1Q9Y566 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHANK1Q9Y566 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHANK1Q9Y566 AC099791.1-201ENST00000416440 715 ntBASIC20.81■□□□□ 0.92
SHANK1Q9Y566 AC008764.7-201ENST00000593779 1081 ntBASIC20.81■□□□□ 0.92
SHANK1Q9Y566 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
SHANK1Q9Y566 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHANK1Q9Y566 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHANK1Q9Y566 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHANK1Q9Y566 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC20.81■□□□□ 0.92
SHANK1Q9Y566 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHANK1Q9Y566 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHANK1Q9Y566 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHANK1Q9Y566 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
SHANK1Q9Y566 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.8■□□□□ 0.92
SHANK1Q9Y566 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHANK1Q9Y566 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SHANK1Q9Y566 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SHANK1Q9Y566 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHANK1Q9Y566 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHANK1Q9Y566 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SHANK1Q9Y566 AC097639.1-201ENST00000565519 1891 ntBASIC20.8■□□□□ 0.92
SHANK1Q9Y566 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC20.79■□□□□ 0.92
SHANK1Q9Y566 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SHANK1Q9Y566 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms