Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC22.22■■□□□ 1.15
CUEDC1Q9NWM3 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CUEDC1Q9NWM3 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC22.22■■□□□ 1.15
CUEDC1Q9NWM3 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC22.22■■□□□ 1.15
CUEDC1Q9NWM3 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC22.22■■□□□ 1.15
CUEDC1Q9NWM3 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC22.22■■□□□ 1.15
CUEDC1Q9NWM3 SENP5-202ENST00000419026 973 ntTSL 3 BASIC22.22■■□□□ 1.15
CUEDC1Q9NWM3 AC239859.2-201ENST00000444165 318 ntBASIC22.22■■□□□ 1.15
CUEDC1Q9NWM3 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
CUEDC1Q9NWM3 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC22.22■■□□□ 1.15
CUEDC1Q9NWM3 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CUEDC1Q9NWM3 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
CUEDC1Q9NWM3 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC22.22■■□□□ 1.15
CUEDC1Q9NWM3 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
CUEDC1Q9NWM3 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CUEDC1Q9NWM3 AC008406.3-201ENST00000620001 1374 ntBASIC22.22■■□□□ 1.15
CUEDC1Q9NWM3 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CUEDC1Q9NWM3 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CUEDC1Q9NWM3 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
CUEDC1Q9NWM3 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC22.21■■□□□ 1.15
CUEDC1Q9NWM3 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC22.21■■□□□ 1.15
CUEDC1Q9NWM3 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CUEDC1Q9NWM3 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CUEDC1Q9NWM3 AC021242.3-201ENST00000607598 1377 ntBASIC22.21■■□□□ 1.15
CUEDC1Q9NWM3 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC22.21■■□□□ 1.15
CUEDC1Q9NWM3 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
CUEDC1Q9NWM3 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
CUEDC1Q9NWM3 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.15
CUEDC1Q9NWM3 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC22.2■■□□□ 1.14
CUEDC1Q9NWM3 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC22.2■■□□□ 1.14
CUEDC1Q9NWM3 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
CUEDC1Q9NWM3 LSM7-203ENST00000585409 512 ntTSL 2 BASIC22.2■■□□□ 1.14
CUEDC1Q9NWM3 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC22.2■■□□□ 1.14
CUEDC1Q9NWM3 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC22.2■■□□□ 1.14
CUEDC1Q9NWM3 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC22.2■■□□□ 1.14
CUEDC1Q9NWM3 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
CUEDC1Q9NWM3 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CUEDC1Q9NWM3 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CUEDC1Q9NWM3 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CUEDC1Q9NWM3 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
CUEDC1Q9NWM3 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CUEDC1Q9NWM3 Z92544.1-202ENST00000571933 1220 ntBASIC22.19■■□□□ 1.14
CUEDC1Q9NWM3 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CUEDC1Q9NWM3 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
CUEDC1Q9NWM3 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CUEDC1Q9NWM3 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
CUEDC1Q9NWM3 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CUEDC1Q9NWM3 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CUEDC1Q9NWM3 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC22.18■■□□□ 1.14
CUEDC1Q9NWM3 TK2-202ENST00000417693 1046 ntTSL 2 BASIC22.18■■□□□ 1.14
CUEDC1Q9NWM3 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
CUEDC1Q9NWM3 AC093323.1-202ENST00000635031 2045 ntBASIC22.18■■□□□ 1.14
CUEDC1Q9NWM3 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
CUEDC1Q9NWM3 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CUEDC1Q9NWM3 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CUEDC1Q9NWM3 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
CUEDC1Q9NWM3 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CUEDC1Q9NWM3 AC141586.4-201ENST00000624558 1573 ntBASIC22.17■■□□□ 1.14
CUEDC1Q9NWM3 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
CUEDC1Q9NWM3 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC22.17■■□□□ 1.14
CUEDC1Q9NWM3 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC22.17■■□□□ 1.14
CUEDC1Q9NWM3 KRT125P-201ENST00000546827 989 ntBASIC22.17■■□□□ 1.14
CUEDC1Q9NWM3 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CUEDC1Q9NWM3 AL022069.1-201ENST00000568025 1636 ntBASIC22.17■■□□□ 1.14
CUEDC1Q9NWM3 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CUEDC1Q9NWM3 CD37-213ENST00000598095 1598 ntTSL 2 BASIC22.16■■□□□ 1.14
CUEDC1Q9NWM3 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
CUEDC1Q9NWM3 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CUEDC1Q9NWM3 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC22.16■■□□□ 1.14
CUEDC1Q9NWM3 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CUEDC1Q9NWM3 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC22.16■■□□□ 1.14
CUEDC1Q9NWM3 MIR4787-201ENST00000607364 84 ntBASIC22.16■■□□□ 1.14
CUEDC1Q9NWM3 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CUEDC1Q9NWM3 AC004812.2-201ENST00000611079 2094 ntBASIC22.16■■□□□ 1.14
CUEDC1Q9NWM3 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC22.16■■□□□ 1.14
CUEDC1Q9NWM3 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
CUEDC1Q9NWM3 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
CUEDC1Q9NWM3 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC22.15■■□□□ 1.14
CUEDC1Q9NWM3 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CUEDC1Q9NWM3 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC22.15■■□□□ 1.14
CUEDC1Q9NWM3 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
CUEDC1Q9NWM3 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CUEDC1Q9NWM3 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC22.14■■□□□ 1.14
CUEDC1Q9NWM3 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC22.14■■□□□ 1.13
CUEDC1Q9NWM3 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
CUEDC1Q9NWM3 SNX5-217ENST00000606557 1087 ntBASIC22.14■■□□□ 1.13
CUEDC1Q9NWM3 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC22.14■■□□□ 1.13
CUEDC1Q9NWM3 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC22.14■■□□□ 1.13
CUEDC1Q9NWM3 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC22.14■■□□□ 1.13
CUEDC1Q9NWM3 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CUEDC1Q9NWM3 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC22.14■■□□□ 1.13
CUEDC1Q9NWM3 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CUEDC1Q9NWM3 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CUEDC1Q9NWM3 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
CUEDC1Q9NWM3 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
CUEDC1Q9NWM3 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC22.13■■□□□ 1.13
CUEDC1Q9NWM3 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CUEDC1Q9NWM3 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CUEDC1Q9NWM3 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
CUEDC1Q9NWM3 STK32C-205ENST00000456004 607 ntTSL 2 BASIC22.12■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms