Protein–RNA interactions for Protein: Q9HBD1

RC3H2, Roquin-2, humanhuman

Known RBP Predictions only

Length 1,191 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H2Q9HBD1 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
RC3H2Q9HBD1 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
RC3H2Q9HBD1 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
RC3H2Q9HBD1 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC24.84■■□□□ 1.57
RC3H2Q9HBD1 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC24.83■■□□□ 1.57
RC3H2Q9HBD1 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
RC3H2Q9HBD1 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC24.83■■□□□ 1.57
RC3H2Q9HBD1 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC24.83■■□□□ 1.57
RC3H2Q9HBD1 AC027682.1-201ENST00000562846 899 ntBASIC24.83■■□□□ 1.57
RC3H2Q9HBD1 AC099791.2-201ENST00000605725 427 ntBASIC24.83■■□□□ 1.57
RC3H2Q9HBD1 AC087623.3-201ENST00000607047 1098 ntBASIC24.83■■□□□ 1.57
RC3H2Q9HBD1 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
RC3H2Q9HBD1 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
RC3H2Q9HBD1 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC24.82■■□□□ 1.56
RC3H2Q9HBD1 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
RC3H2Q9HBD1 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
RC3H2Q9HBD1 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC24.82■■□□□ 1.56
RC3H2Q9HBD1 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
RC3H2Q9HBD1 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC24.82■■□□□ 1.56
RC3H2Q9HBD1 AC009102.2-201ENST00000606772 1639 ntBASIC24.82■■□□□ 1.56
RC3H2Q9HBD1 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC24.81■■□□□ 1.56
RC3H2Q9HBD1 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC24.81■■□□□ 1.56
RC3H2Q9HBD1 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
RC3H2Q9HBD1 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
RC3H2Q9HBD1 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
RC3H2Q9HBD1 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
RC3H2Q9HBD1 PLD4-205ENST00000553861 667 ntTSL 2 BASIC24.81■■□□□ 1.56
RC3H2Q9HBD1 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
RC3H2Q9HBD1 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC24.8■■□□□ 1.56
RC3H2Q9HBD1 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC24.8■■□□□ 1.56
RC3H2Q9HBD1 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
RC3H2Q9HBD1 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC24.8■■□□□ 1.56
RC3H2Q9HBD1 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC24.8■■□□□ 1.56
RC3H2Q9HBD1 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC24.8■■□□□ 1.56
RC3H2Q9HBD1 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
RC3H2Q9HBD1 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC24.8■■□□□ 1.56
RC3H2Q9HBD1 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
RC3H2Q9HBD1 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC24.8■■□□□ 1.56
RC3H2Q9HBD1 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
RC3H2Q9HBD1 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
RC3H2Q9HBD1 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
RC3H2Q9HBD1 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
RC3H2Q9HBD1 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC24.8■■□□□ 1.56
RC3H2Q9HBD1 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC24.79■■□□□ 1.56
RC3H2Q9HBD1 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
RC3H2Q9HBD1 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
RC3H2Q9HBD1 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC24.79■■□□□ 1.56
RC3H2Q9HBD1 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC24.79■■□□□ 1.56
RC3H2Q9HBD1 STK32C-205ENST00000456004 607 ntTSL 2 BASIC24.79■■□□□ 1.56
RC3H2Q9HBD1 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
RC3H2Q9HBD1 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
RC3H2Q9HBD1 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC24.78■■□□□ 1.56
RC3H2Q9HBD1 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC24.78■■□□□ 1.56
RC3H2Q9HBD1 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC24.78■■□□□ 1.56
RC3H2Q9HBD1 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC24.78■■□□□ 1.56
RC3H2Q9HBD1 C17orf82-201ENST00000623772 1530 ntBASIC24.78■■□□□ 1.56
RC3H2Q9HBD1 AL162430.1-201ENST00000480705 870 ntBASIC24.78■■□□□ 1.56
RC3H2Q9HBD1 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC24.78■■□□□ 1.56
RC3H2Q9HBD1 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
RC3H2Q9HBD1 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
RC3H2Q9HBD1 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
RC3H2Q9HBD1 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC24.77■■□□□ 1.56
RC3H2Q9HBD1 PARL-206ENST00000435888 1098 ntTSL 5 BASIC24.77■■□□□ 1.56
RC3H2Q9HBD1 MIR6089-201ENST00000616698 64 ntBASIC24.77■■□□□ 1.56
RC3H2Q9HBD1 AC092803.2-201ENST00000564287 1899 ntBASIC24.77■■□□□ 1.56
RC3H2Q9HBD1 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC24.76■■□□□ 1.55
RC3H2Q9HBD1 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
RC3H2Q9HBD1 SLC6A10P-202ENST00000431994 2058 ntBASIC24.76■■□□□ 1.55
RC3H2Q9HBD1 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
RC3H2Q9HBD1 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
RC3H2Q9HBD1 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
RC3H2Q9HBD1 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC24.75■■□□□ 1.55
RC3H2Q9HBD1 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
RC3H2Q9HBD1 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
RC3H2Q9HBD1 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC24.75■■□□□ 1.55
RC3H2Q9HBD1 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC24.75■■□□□ 1.55
RC3H2Q9HBD1 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC24.75■■□□□ 1.55
RC3H2Q9HBD1 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
RC3H2Q9HBD1 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC24.74■■□□□ 1.55
RC3H2Q9HBD1 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC24.74■■□□□ 1.55
RC3H2Q9HBD1 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC24.74■■□□□ 1.55
RC3H2Q9HBD1 AC136469.2-201ENST00000623944 1028 ntBASIC24.74■■□□□ 1.55
RC3H2Q9HBD1 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
RC3H2Q9HBD1 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC24.74■■□□□ 1.55
RC3H2Q9HBD1 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC24.74■■□□□ 1.55
RC3H2Q9HBD1 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC24.74■■□□□ 1.55
RC3H2Q9HBD1 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
RC3H2Q9HBD1 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC24.73■■□□□ 1.55
RC3H2Q9HBD1 AC099791.1-201ENST00000416440 715 ntBASIC24.73■■□□□ 1.55
RC3H2Q9HBD1 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC24.73■■□□□ 1.55
RC3H2Q9HBD1 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
RC3H2Q9HBD1 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC24.73■■□□□ 1.55
RC3H2Q9HBD1 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC24.72■■□□□ 1.55
RC3H2Q9HBD1 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
RC3H2Q9HBD1 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
RC3H2Q9HBD1 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
RC3H2Q9HBD1 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
RC3H2Q9HBD1 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC24.72■■□□□ 1.55
RC3H2Q9HBD1 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
RC3H2Q9HBD1 IRS3P-201ENST00000223076 1006 ntBASIC24.72■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms