Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
USP42Q9H9J4 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
USP42Q9H9J4 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
USP42Q9H9J4 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC29.49■■■□□ 2.31
USP42Q9H9J4 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
USP42Q9H9J4 AC097381.1-201ENST00000429019 1296 ntBASIC29.49■■■□□ 2.31
USP42Q9H9J4 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
USP42Q9H9J4 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
USP42Q9H9J4 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC29.49■■■□□ 2.31
USP42Q9H9J4 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC29.49■■■□□ 2.31
USP42Q9H9J4 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC29.48■■■□□ 2.31
USP42Q9H9J4 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC29.48■■■□□ 2.31
USP42Q9H9J4 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
USP42Q9H9J4 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
USP42Q9H9J4 AC097639.1-201ENST00000565519 1891 ntBASIC29.48■■■□□ 2.31
USP42Q9H9J4 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
USP42Q9H9J4 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC29.47■■■□□ 2.31
USP42Q9H9J4 MIR4767-201ENST00000582827 78 ntBASIC29.47■■■□□ 2.31
USP42Q9H9J4 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
USP42Q9H9J4 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC29.47■■■□□ 2.31
USP42Q9H9J4 AC005703.6-201ENST00000623265 1329 ntBASIC29.47■■■□□ 2.31
USP42Q9H9J4 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
USP42Q9H9J4 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
USP42Q9H9J4 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC29.47■■■□□ 2.31
USP42Q9H9J4 PARL-206ENST00000435888 1098 ntTSL 5 BASIC29.46■■■□□ 2.31
USP42Q9H9J4 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
USP42Q9H9J4 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC29.46■■■□□ 2.31
USP42Q9H9J4 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC29.46■■■□□ 2.31
USP42Q9H9J4 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
USP42Q9H9J4 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC29.46■■■□□ 2.31
USP42Q9H9J4 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC29.45■■■□□ 2.31
USP42Q9H9J4 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
USP42Q9H9J4 SYT6-210ENST00000641643 1587 ntBASIC29.45■■■□□ 2.31
USP42Q9H9J4 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
USP42Q9H9J4 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC29.45■■■□□ 2.3
USP42Q9H9J4 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC29.45■■■□□ 2.3
USP42Q9H9J4 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC29.45■■■□□ 2.3
USP42Q9H9J4 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.3
USP42Q9H9J4 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC29.45■■■□□ 2.3
USP42Q9H9J4 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC29.44■■■□□ 2.3
USP42Q9H9J4 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC29.44■■■□□ 2.3
USP42Q9H9J4 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
USP42Q9H9J4 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC29.44■■■□□ 2.3
USP42Q9H9J4 MAG-206ENST00000597035 542 ntTSL 4 BASIC29.44■■■□□ 2.3
USP42Q9H9J4 AC087623.3-201ENST00000607047 1098 ntBASIC29.44■■■□□ 2.3
USP42Q9H9J4 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
USP42Q9H9J4 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
USP42Q9H9J4 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
USP42Q9H9J4 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC29.43■■■□□ 2.3
USP42Q9H9J4 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC29.43■■■□□ 2.3
USP42Q9H9J4 PTMA-205ENST00000410064 814 ntTSL 2 BASIC29.43■■■□□ 2.3
USP42Q9H9J4 CA15P2-201ENST00000611168 834 ntBASIC29.43■■■□□ 2.3
USP42Q9H9J4 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC29.42■■■□□ 2.3
USP42Q9H9J4 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
USP42Q9H9J4 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC29.42■■■□□ 2.3
USP42Q9H9J4 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
USP42Q9H9J4 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC29.42■■■□□ 2.3
USP42Q9H9J4 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
USP42Q9H9J4 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC29.41■■■□□ 2.3
USP42Q9H9J4 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC29.41■■■□□ 2.3
USP42Q9H9J4 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC29.41■■■□□ 2.3
USP42Q9H9J4 SERBP1P1-201ENST00000396021 1160 ntBASIC29.41■■■□□ 2.3
USP42Q9H9J4 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC29.41■■■□□ 2.3
USP42Q9H9J4 AL162430.1-201ENST00000480705 870 ntBASIC29.41■■■□□ 2.3
USP42Q9H9J4 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
USP42Q9H9J4 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
USP42Q9H9J4 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
USP42Q9H9J4 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC29.4■■■□□ 2.3
USP42Q9H9J4 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
USP42Q9H9J4 PLD4-205ENST00000553861 667 ntTSL 2 BASIC29.4■■■□□ 2.3
USP42Q9H9J4 AC092171.4-201ENST00000609130 632 ntBASIC29.4■■■□□ 2.3
USP42Q9H9J4 RASA4CP-201ENST00000424092 1398 ntBASIC29.39■■■□□ 2.3
USP42Q9H9J4 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
USP42Q9H9J4 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
USP42Q9H9J4 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC29.39■■■□□ 2.3
USP42Q9H9J4 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
USP42Q9H9J4 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC29.39■■■□□ 2.3
USP42Q9H9J4 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC29.39■■■□□ 2.3
USP42Q9H9J4 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC29.39■■■□□ 2.3
USP42Q9H9J4 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
USP42Q9H9J4 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC29.39■■■□□ 2.29
USP42Q9H9J4 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC29.38■■■□□ 2.29
USP42Q9H9J4 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC29.38■■■□□ 2.29
USP42Q9H9J4 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
USP42Q9H9J4 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC29.38■■■□□ 2.29
USP42Q9H9J4 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
USP42Q9H9J4 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
USP42Q9H9J4 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
USP42Q9H9J4 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
USP42Q9H9J4 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC29.37■■■□□ 2.29
USP42Q9H9J4 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
USP42Q9H9J4 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
USP42Q9H9J4 AC027682.1-201ENST00000562846 899 ntBASIC29.37■■■□□ 2.29
USP42Q9H9J4 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC29.36■■■□□ 2.29
USP42Q9H9J4 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC29.36■■■□□ 2.29
USP42Q9H9J4 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC29.36■■■□□ 2.29
USP42Q9H9J4 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC29.36■■■□□ 2.29
USP42Q9H9J4 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC29.35■■■□□ 2.29
USP42Q9H9J4 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC29.35■■■□□ 2.29
USP42Q9H9J4 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms