Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 STK32C-205ENST00000456004 607 ntTSL 2 BASIC25.82■■□□□ 1.72
UPF3AQ9H1J1 MAG-206ENST00000597035 542 ntTSL 4 BASIC25.82■■□□□ 1.72
UPF3AQ9H1J1 RASA4CP-201ENST00000424092 1398 ntBASIC25.82■■□□□ 1.72
UPF3AQ9H1J1 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC25.81■■□□□ 1.72
UPF3AQ9H1J1 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC25.81■■□□□ 1.72
UPF3AQ9H1J1 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
UPF3AQ9H1J1 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
UPF3AQ9H1J1 AL138724.1-201ENST00000606771 1088 ntBASIC25.81■■□□□ 1.72
UPF3AQ9H1J1 AC011298.3-201ENST00000615796 283 ntBASIC25.81■■□□□ 1.72
UPF3AQ9H1J1 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC25.81■■□□□ 1.72
UPF3AQ9H1J1 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
UPF3AQ9H1J1 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC25.8■■□□□ 1.72
UPF3AQ9H1J1 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
UPF3AQ9H1J1 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC25.8■■□□□ 1.72
UPF3AQ9H1J1 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC25.8■■□□□ 1.72
UPF3AQ9H1J1 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC25.8■■□□□ 1.72
UPF3AQ9H1J1 AC097381.1-201ENST00000429019 1296 ntBASIC25.8■■□□□ 1.72
UPF3AQ9H1J1 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC25.8■■□□□ 1.72
UPF3AQ9H1J1 AC099791.2-201ENST00000605725 427 ntBASIC25.8■■□□□ 1.72
UPF3AQ9H1J1 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
UPF3AQ9H1J1 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC25.79■■□□□ 1.72
UPF3AQ9H1J1 PTCHD3P2-201ENST00000424937 1205 ntBASIC25.79■■□□□ 1.72
UPF3AQ9H1J1 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC25.79■■□□□ 1.72
UPF3AQ9H1J1 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
UPF3AQ9H1J1 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
UPF3AQ9H1J1 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
UPF3AQ9H1J1 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
UPF3AQ9H1J1 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
UPF3AQ9H1J1 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC25.78■■□□□ 1.72
UPF3AQ9H1J1 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC25.78■■□□□ 1.72
UPF3AQ9H1J1 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC25.78■■□□□ 1.72
UPF3AQ9H1J1 AC027682.1-201ENST00000562846 899 ntBASIC25.78■■□□□ 1.72
UPF3AQ9H1J1 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
UPF3AQ9H1J1 ANKRD20A6P-201ENST00000618763 204 ntBASIC25.78■■□□□ 1.72
UPF3AQ9H1J1 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC25.78■■□□□ 1.72
UPF3AQ9H1J1 AC009102.2-201ENST00000606772 1639 ntBASIC25.77■■□□□ 1.72
UPF3AQ9H1J1 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
UPF3AQ9H1J1 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
UPF3AQ9H1J1 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC25.77■■□□□ 1.72
UPF3AQ9H1J1 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC25.77■■□□□ 1.72
UPF3AQ9H1J1 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC25.77■■□□□ 1.72
UPF3AQ9H1J1 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
UPF3AQ9H1J1 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
UPF3AQ9H1J1 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
UPF3AQ9H1J1 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.72
UPF3AQ9H1J1 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC25.76■■□□□ 1.71
UPF3AQ9H1J1 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC25.76■■□□□ 1.71
UPF3AQ9H1J1 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
UPF3AQ9H1J1 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC25.76■■□□□ 1.71
UPF3AQ9H1J1 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC25.76■■□□□ 1.71
UPF3AQ9H1J1 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
UPF3AQ9H1J1 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC25.76■■□□□ 1.71
UPF3AQ9H1J1 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC25.76■■□□□ 1.71
UPF3AQ9H1J1 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
UPF3AQ9H1J1 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC25.75■■□□□ 1.71
UPF3AQ9H1J1 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC25.75■■□□□ 1.71
UPF3AQ9H1J1 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC25.75■■□□□ 1.71
UPF3AQ9H1J1 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
UPF3AQ9H1J1 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
UPF3AQ9H1J1 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
UPF3AQ9H1J1 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
UPF3AQ9H1J1 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC25.75■■□□□ 1.71
UPF3AQ9H1J1 AC092803.2-201ENST00000564287 1899 ntBASIC25.74■■□□□ 1.71
UPF3AQ9H1J1 AC087623.3-201ENST00000607047 1098 ntBASIC25.74■■□□□ 1.71
UPF3AQ9H1J1 MIR6089-201ENST00000616698 64 ntBASIC25.74■■□□□ 1.71
UPF3AQ9H1J1 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC25.74■■□□□ 1.71
UPF3AQ9H1J1 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC25.74■■□□□ 1.71
UPF3AQ9H1J1 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
UPF3AQ9H1J1 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC25.74■■□□□ 1.71
UPF3AQ9H1J1 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC25.73■■□□□ 1.71
UPF3AQ9H1J1 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
UPF3AQ9H1J1 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC25.73■■□□□ 1.71
UPF3AQ9H1J1 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
UPF3AQ9H1J1 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC25.73■■□□□ 1.71
UPF3AQ9H1J1 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC25.73■■□□□ 1.71
UPF3AQ9H1J1 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC25.73■■□□□ 1.71
UPF3AQ9H1J1 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC25.72■■□□□ 1.71
UPF3AQ9H1J1 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC25.72■■□□□ 1.71
UPF3AQ9H1J1 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC25.72■■□□□ 1.71
UPF3AQ9H1J1 PLD4-205ENST00000553861 667 ntTSL 2 BASIC25.72■■□□□ 1.71
UPF3AQ9H1J1 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC25.72■■□□□ 1.71
UPF3AQ9H1J1 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC25.72■■□□□ 1.71
UPF3AQ9H1J1 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
UPF3AQ9H1J1 C17orf82-201ENST00000623772 1530 ntBASIC25.72■■□□□ 1.71
UPF3AQ9H1J1 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC25.72■■□□□ 1.71
UPF3AQ9H1J1 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC25.72■■□□□ 1.71
UPF3AQ9H1J1 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC25.71■■□□□ 1.71
UPF3AQ9H1J1 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
UPF3AQ9H1J1 PARL-206ENST00000435888 1098 ntTSL 5 BASIC25.71■■□□□ 1.71
UPF3AQ9H1J1 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC25.71■■□□□ 1.71
UPF3AQ9H1J1 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC25.71■■□□□ 1.71
UPF3AQ9H1J1 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC25.71■■□□□ 1.71
UPF3AQ9H1J1 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC25.7■■□□□ 1.71
UPF3AQ9H1J1 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
UPF3AQ9H1J1 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC25.7■■□□□ 1.71
UPF3AQ9H1J1 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
UPF3AQ9H1J1 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
UPF3AQ9H1J1 AC008764.7-201ENST00000593779 1081 ntBASIC25.7■■□□□ 1.7
UPF3AQ9H1J1 SLC6A10P-202ENST00000431994 2058 ntBASIC25.7■■□□□ 1.7
UPF3AQ9H1J1 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC25.69■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms