Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.26
CFAP54Q96N23 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
CFAP54Q96N23 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC22.89■■□□□ 1.26
CFAP54Q96N23 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC22.89■■□□□ 1.25
CFAP54Q96N23 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
CFAP54Q96N23 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC22.89■■□□□ 1.25
CFAP54Q96N23 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC22.89■■□□□ 1.25
CFAP54Q96N23 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC22.89■■□□□ 1.25
CFAP54Q96N23 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CFAP54Q96N23 MAP2K4P1-201ENST00000438453 1195 ntBASIC22.88■■□□□ 1.25
CFAP54Q96N23 CBFB-203ENST00000561924 584 ntTSL 5 BASIC22.88■■□□□ 1.25
CFAP54Q96N23 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CFAP54Q96N23 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CFAP54Q96N23 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CFAP54Q96N23 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC22.87■■□□□ 1.25
CFAP54Q96N23 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
CFAP54Q96N23 AL138724.1-201ENST00000606771 1088 ntBASIC22.87■■□□□ 1.25
CFAP54Q96N23 AL358852.1-201ENST00000623174 1268 ntBASIC22.87■■□□□ 1.25
CFAP54Q96N23 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC22.87■■□□□ 1.25
CFAP54Q96N23 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
CFAP54Q96N23 CD99P1-205ENST00000527459 561 ntBASIC22.86■■□□□ 1.25
CFAP54Q96N23 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CFAP54Q96N23 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
CFAP54Q96N23 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CFAP54Q96N23 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CFAP54Q96N23 TERF1P2-201ENST00000583350 1212 ntBASIC22.86■■□□□ 1.25
CFAP54Q96N23 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC22.86■■□□□ 1.25
CFAP54Q96N23 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC22.86■■□□□ 1.25
CFAP54Q96N23 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC22.86■■□□□ 1.25
CFAP54Q96N23 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC22.85■■□□□ 1.25
CFAP54Q96N23 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
CFAP54Q96N23 AC026185.1-201ENST00000445748 174 ntBASIC22.85■■□□□ 1.25
CFAP54Q96N23 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC22.85■■□□□ 1.25
CFAP54Q96N23 CCDC92B-201ENST00000575506 885 ntBASIC22.85■■□□□ 1.25
CFAP54Q96N23 AC008687.6-201ENST00000596318 630 ntBASIC22.85■■□□□ 1.25
CFAP54Q96N23 MIR6722-201ENST00000617286 78 ntBASIC22.85■■□□□ 1.25
CFAP54Q96N23 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
CFAP54Q96N23 AC006015.1-201ENST00000429970 570 ntBASIC22.85■■□□□ 1.25
CFAP54Q96N23 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
CFAP54Q96N23 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC22.84■■□□□ 1.25
CFAP54Q96N23 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC22.84■■□□□ 1.25
CFAP54Q96N23 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC22.84■■□□□ 1.25
CFAP54Q96N23 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
CFAP54Q96N23 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC22.84■■□□□ 1.25
CFAP54Q96N23 CROCCP5-201ENST00000436658 830 ntBASIC22.84■■□□□ 1.25
CFAP54Q96N23 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
CFAP54Q96N23 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
CFAP54Q96N23 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
CFAP54Q96N23 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
CFAP54Q96N23 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC22.83■■□□□ 1.25
CFAP54Q96N23 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC22.83■■□□□ 1.24
CFAP54Q96N23 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC22.82■■□□□ 1.24
CFAP54Q96N23 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC22.82■■□□□ 1.24
CFAP54Q96N23 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
CFAP54Q96N23 NTF6G-201ENST00000591094 616 ntBASIC22.82■■□□□ 1.24
CFAP54Q96N23 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC22.82■■□□□ 1.24
CFAP54Q96N23 MPST-208ENST00000628507 698 ntTSL 5 BASIC22.82■■□□□ 1.24
CFAP54Q96N23 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
CFAP54Q96N23 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
CFAP54Q96N23 PARP1-210ENST00000629232 477 ntTSL 5 BASIC22.81■■□□□ 1.24
CFAP54Q96N23 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC22.81■■□□□ 1.24
CFAP54Q96N23 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC22.81■■□□□ 1.24
CFAP54Q96N23 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
CFAP54Q96N23 NCF1B-203ENST00000435988 1254 ntBASIC22.81■■□□□ 1.24
CFAP54Q96N23 PPP1R14BP3-201ENST00000509033 445 ntBASIC22.81■■□□□ 1.24
CFAP54Q96N23 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC22.81■■□□□ 1.24
CFAP54Q96N23 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC22.81■■□□□ 1.24
CFAP54Q96N23 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC22.81■■□□□ 1.24
CFAP54Q96N23 PROC-203ENST00000409048 1586 ntTSL 5 BASIC22.81■■□□□ 1.24
CFAP54Q96N23 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC22.8■■□□□ 1.24
CFAP54Q96N23 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC22.8■■□□□ 1.24
CFAP54Q96N23 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC22.8■■□□□ 1.24
CFAP54Q96N23 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC22.8■■□□□ 1.24
CFAP54Q96N23 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC22.8■■□□□ 1.24
CFAP54Q96N23 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC22.8■■□□□ 1.24
CFAP54Q96N23 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CFAP54Q96N23 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
CFAP54Q96N23 KRT18P14-201ENST00000534205 1250 ntBASIC22.8■■□□□ 1.24
CFAP54Q96N23 MIR4651-201ENST00000582622 73 ntBASIC22.8■■□□□ 1.24
CFAP54Q96N23 AC073111.5-205ENST00000641717 521 ntBASIC22.8■■□□□ 1.24
CFAP54Q96N23 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC22.8■■□□□ 1.24
CFAP54Q96N23 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
CFAP54Q96N23 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC22.79■■□□□ 1.24
CFAP54Q96N23 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
CFAP54Q96N23 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC22.79■■□□□ 1.24
CFAP54Q96N23 GRAMD4P2-201ENST00000423297 1097 ntBASIC22.79■■□□□ 1.24
CFAP54Q96N23 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
CFAP54Q96N23 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC22.79■■□□□ 1.24
CFAP54Q96N23 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
CFAP54Q96N23 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC22.79■■□□□ 1.24
CFAP54Q96N23 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
CFAP54Q96N23 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CFAP54Q96N23 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
CFAP54Q96N23 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC22.78■■□□□ 1.24
CFAP54Q96N23 AC136469.2-201ENST00000623944 1028 ntBASIC22.78■■□□□ 1.24
CFAP54Q96N23 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CFAP54Q96N23 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC22.78■■□□□ 1.24
CFAP54Q96N23 AC080038.1-201ENST00000611274 1154 ntBASIC22.78■■□□□ 1.24
CFAP54Q96N23 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CFAP54Q96N23 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms