Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LINC00477Q96M19 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LINC00477Q96M19 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC17.16■□□□□ 0.34
LINC00477Q96M19 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC17.16■□□□□ 0.34
LINC00477Q96M19 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC17.16■□□□□ 0.34
LINC00477Q96M19 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LINC00477Q96M19 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LINC00477Q96M19 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC17.16■□□□□ 0.34
LINC00477Q96M19 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LINC00477Q96M19 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
LINC00477Q96M19 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
LINC00477Q96M19 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC17.15■□□□□ 0.34
LINC00477Q96M19 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
LINC00477Q96M19 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC17.15■□□□□ 0.34
LINC00477Q96M19 AC068473.5-201ENST00000616428 2072 ntBASIC17.15■□□□□ 0.34
LINC00477Q96M19 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC17.15■□□□□ 0.34
LINC00477Q96M19 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
LINC00477Q96M19 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
LINC00477Q96M19 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
LINC00477Q96M19 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC17.14■□□□□ 0.33
LINC00477Q96M19 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LINC00477Q96M19 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LINC00477Q96M19 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LINC00477Q96M19 DUX4L9-201ENST00000449051 1259 ntBASIC17.14■□□□□ 0.33
LINC00477Q96M19 HYI-210ENST00000486909 905 ntTSL 5 BASIC17.14■□□□□ 0.33
LINC00477Q96M19 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC17.14■□□□□ 0.33
LINC00477Q96M19 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC17.14■□□□□ 0.33
LINC00477Q96M19 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LINC00477Q96M19 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LINC00477Q96M19 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LINC00477Q96M19 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
LINC00477Q96M19 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC17.14■□□□□ 0.33
LINC00477Q96M19 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LINC00477Q96M19 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
LINC00477Q96M19 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
LINC00477Q96M19 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LINC00477Q96M19 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LINC00477Q96M19 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LINC00477Q96M19 LONRF2P2-201ENST00000439212 571 ntBASIC17.13■□□□□ 0.33
LINC00477Q96M19 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LINC00477Q96M19 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC17.13■□□□□ 0.33
LINC00477Q96M19 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC17.13■□□□□ 0.33
LINC00477Q96M19 CD37-213ENST00000598095 1598 ntTSL 2 BASIC17.13■□□□□ 0.33
LINC00477Q96M19 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC17.13■□□□□ 0.33
LINC00477Q96M19 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LINC00477Q96M19 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC17.13■□□□□ 0.33
LINC00477Q96M19 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LINC00477Q96M19 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC17.12■□□□□ 0.33
LINC00477Q96M19 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC17.12■□□□□ 0.33
LINC00477Q96M19 NFE2L3P1-201ENST00000588207 1959 ntBASIC17.12■□□□□ 0.33
LINC00477Q96M19 RARRES2P2-201ENST00000394842 485 ntBASIC17.12■□□□□ 0.33
LINC00477Q96M19 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
LINC00477Q96M19 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC17.12■□□□□ 0.33
LINC00477Q96M19 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LINC00477Q96M19 AC133561.1-201ENST00000568600 2415 ntBASIC17.12■□□□□ 0.33
LINC00477Q96M19 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LINC00477Q96M19 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
LINC00477Q96M19 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LINC00477Q96M19 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
LINC00477Q96M19 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LINC00477Q96M19 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LINC00477Q96M19 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
LINC00477Q96M19 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LINC00477Q96M19 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LINC00477Q96M19 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LINC00477Q96M19 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LINC00477Q96M19 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC17.11■□□□□ 0.33
LINC00477Q96M19 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LINC00477Q96M19 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC17.11■□□□□ 0.33
LINC00477Q96M19 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LINC00477Q96M19 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LINC00477Q96M19 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC17.11■□□□□ 0.33
LINC00477Q96M19 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LINC00477Q96M19 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LINC00477Q96M19 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LINC00477Q96M19 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC17.11■□□□□ 0.33
LINC00477Q96M19 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LINC00477Q96M19 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LINC00477Q96M19 AL022069.1-201ENST00000568025 1636 ntBASIC17.1■□□□□ 0.33
LINC00477Q96M19 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LINC00477Q96M19 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
LINC00477Q96M19 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
LINC00477Q96M19 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LINC00477Q96M19 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
LINC00477Q96M19 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC17.1■□□□□ 0.33
LINC00477Q96M19 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
LINC00477Q96M19 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LINC00477Q96M19 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
LINC00477Q96M19 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LINC00477Q96M19 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC17.1■□□□□ 0.33
LINC00477Q96M19 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LINC00477Q96M19 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
LINC00477Q96M19 AC011551.1-201ENST00000614101 683 ntBASIC17.09■□□□□ 0.33
LINC00477Q96M19 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
LINC00477Q96M19 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
LINC00477Q96M19 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LINC00477Q96M19 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
LINC00477Q96M19 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LINC00477Q96M19 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LINC00477Q96M19 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms