Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 PKM-204ENST00000449901 2526 ntTSL 2 BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC7.01□□□□□ -1.29
SYNE1Q8NF91 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC7□□□□□ -1.29
SYNE1Q8NF91 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC7□□□□□ -1.29
SYNE1Q8NF91 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC7□□□□□ -1.29
SYNE1Q8NF91 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC7□□□□□ -1.29
SYNE1Q8NF91 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC7□□□□□ -1.29
SYNE1Q8NF91 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC7□□□□□ -1.29
SYNE1Q8NF91 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC7□□□□□ -1.29
SYNE1Q8NF91 SERBP1P1-201ENST00000396021 1160 ntBASIC7□□□□□ -1.29
SYNE1Q8NF91 CLTA-206ENST00000466396 695 ntTSL 2 BASIC7□□□□□ -1.29
SYNE1Q8NF91 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC7□□□□□ -1.29
SYNE1Q8NF91 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC7□□□□□ -1.29
SYNE1Q8NF91 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC7□□□□□ -1.29
SYNE1Q8NF91 MAG-206ENST00000597035 542 ntTSL 4 BASIC7□□□□□ -1.29
SYNE1Q8NF91 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC7□□□□□ -1.29
SYNE1Q8NF91 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC7□□□□□ -1.29
SYNE1Q8NF91 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
SYNE1Q8NF91 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC7□□□□□ -1.29
SYNE1Q8NF91 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC7□□□□□ -1.29
SYNE1Q8NF91 HYI-206ENST00000372434 1025 ntTSL 5 BASIC7□□□□□ -1.29
SYNE1Q8NF91 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC7□□□□□ -1.29
SYNE1Q8NF91 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC7□□□□□ -1.29
SYNE1Q8NF91 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC7□□□□□ -1.29
SYNE1Q8NF91 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC7□□□□□ -1.29
SYNE1Q8NF91 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC7□□□□□ -1.29
SYNE1Q8NF91 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC7□□□□□ -1.29
SYNE1Q8NF91 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC7□□□□□ -1.29
SYNE1Q8NF91 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC7□□□□□ -1.29
SYNE1Q8NF91 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC7□□□□□ -1.29
SYNE1Q8NF91 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC7□□□□□ -1.29
SYNE1Q8NF91 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC7□□□□□ -1.29
SYNE1Q8NF91 GATM-206ENST00000558336 1522 ntTSL 2 BASIC7□□□□□ -1.29
SYNE1Q8NF91 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC7□□□□□ -1.29
SYNE1Q8NF91 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC7□□□□□ -1.29
SYNE1Q8NF91 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 CD72-202ENST00000378430 585 ntTSL 3 BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 AL136162.1-201ENST00000607711 1078 ntBASIC6.99□□□□□ -1.29
SYNE1Q8NF91 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
SYNE1Q8NF91 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
SYNE1Q8NF91 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
SYNE1Q8NF91 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC6.98□□□□□ -1.29
SYNE1Q8NF91 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
SYNE1Q8NF91 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
SYNE1Q8NF91 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC6.98□□□□□ -1.29
SYNE1Q8NF91 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC6.98□□□□□ -1.29
SYNE1Q8NF91 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC6.98□□□□□ -1.29
SYNE1Q8NF91 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
SYNE1Q8NF91 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC6.98□□□□□ -1.29
SYNE1Q8NF91 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC6.98□□□□□ -1.29
SYNE1Q8NF91 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC6.98□□□□□ -1.29
SYNE1Q8NF91 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC6.98□□□□□ -1.29
SYNE1Q8NF91 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
SYNE1Q8NF91 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC6.98□□□□□ -1.29
SYNE1Q8NF91 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC6.98□□□□□ -1.29
SYNE1Q8NF91 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC6.98□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms