Protein–RNA interactions for Protein: Q6ZT12

UBR3, E3 ubiquitin-protein ligase UBR3, humanhuman

Predictions only

Length 1,888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3Q6ZT12 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC29.42■■■□□ 2.3
UBR3Q6ZT12 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC29.42■■■□□ 2.3
UBR3Q6ZT12 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
UBR3Q6ZT12 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
UBR3Q6ZT12 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC29.42■■■□□ 2.3
UBR3Q6ZT12 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC29.42■■■□□ 2.3
UBR3Q6ZT12 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC29.42■■■□□ 2.3
UBR3Q6ZT12 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
UBR3Q6ZT12 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
UBR3Q6ZT12 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
UBR3Q6ZT12 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC29.41■■■□□ 2.3
UBR3Q6ZT12 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC29.41■■■□□ 2.3
UBR3Q6ZT12 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC29.41■■■□□ 2.3
UBR3Q6ZT12 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC29.41■■■□□ 2.3
UBR3Q6ZT12 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
UBR3Q6ZT12 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC29.4■■■□□ 2.3
UBR3Q6ZT12 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC29.4■■■□□ 2.3
UBR3Q6ZT12 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC29.4■■■□□ 2.3
UBR3Q6ZT12 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
UBR3Q6ZT12 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC29.4■■■□□ 2.3
UBR3Q6ZT12 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC29.4■■■□□ 2.3
UBR3Q6ZT12 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC29.4■■■□□ 2.3
UBR3Q6ZT12 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
UBR3Q6ZT12 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC29.39■■■□□ 2.3
UBR3Q6ZT12 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC29.39■■■□□ 2.3
UBR3Q6ZT12 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC29.39■■■□□ 2.3
UBR3Q6ZT12 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC29.39■■■□□ 2.3
UBR3Q6ZT12 DUX4L2-201ENST00000561772 1275 ntBASIC29.39■■■□□ 2.3
UBR3Q6ZT12 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC29.39■■■□□ 2.3
UBR3Q6ZT12 DUX4L6-201ENST00000626483 1275 ntBASIC29.39■■■□□ 2.3
UBR3Q6ZT12 DUX4L1-201ENST00000627662 1275 ntBASIC29.39■■■□□ 2.3
UBR3Q6ZT12 DUX4L8-201ENST00000629013 1275 ntBASIC29.39■■■□□ 2.3
UBR3Q6ZT12 DUX4L3-201ENST00000630187 1275 ntBASIC29.39■■■□□ 2.3
UBR3Q6ZT12 DUX4L7-201ENST00000630678 1275 ntBASIC29.39■■■□□ 2.3
UBR3Q6ZT12 DUX4L5-201ENST00000630834 1275 ntBASIC29.39■■■□□ 2.3
UBR3Q6ZT12 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC29.39■■■□□ 2.3
UBR3Q6ZT12 AC009102.2-201ENST00000606772 1639 ntBASIC29.39■■■□□ 2.29
UBR3Q6ZT12 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.29
UBR3Q6ZT12 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC29.38■■■□□ 2.29
UBR3Q6ZT12 HES6-206ENST00000409574 738 ntTSL 2 BASIC29.38■■■□□ 2.29
UBR3Q6ZT12 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC29.38■■■□□ 2.29
UBR3Q6ZT12 REST-206ENST00000612429 1376 ntTSL 5 BASIC29.38■■■□□ 2.29
UBR3Q6ZT12 REST-207ENST00000616975 1370 ntTSL 5 BASIC29.38■■■□□ 2.29
UBR3Q6ZT12 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
UBR3Q6ZT12 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC29.38■■■□□ 2.29
UBR3Q6ZT12 AK1-201ENST00000223836 736 ntTSL 3 BASIC29.38■■■□□ 2.29
UBR3Q6ZT12 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
UBR3Q6ZT12 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
UBR3Q6ZT12 AC022517.1-201ENST00000592429 346 ntBASIC29.37■■■□□ 2.29
UBR3Q6ZT12 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC29.37■■■□□ 2.29
UBR3Q6ZT12 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
UBR3Q6ZT12 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
UBR3Q6ZT12 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
UBR3Q6ZT12 AC027612.3-201ENST00000413684 1047 ntBASIC29.36■■■□□ 2.29
UBR3Q6ZT12 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
UBR3Q6ZT12 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC29.36■■■□□ 2.29
UBR3Q6ZT12 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC29.35■■■□□ 2.29
UBR3Q6ZT12 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
UBR3Q6ZT12 BX842568.3-201ENST00000418104 571 ntBASIC29.34■■■□□ 2.29
UBR3Q6ZT12 AC233992.3-201ENST00000607491 485 ntBASIC29.34■■■□□ 2.29
UBR3Q6ZT12 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC29.34■■■□□ 2.29
UBR3Q6ZT12 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC29.34■■■□□ 2.29
UBR3Q6ZT12 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC29.34■■■□□ 2.29
UBR3Q6ZT12 AC142086.6-201ENST00000621154 1765 ntBASIC29.34■■■□□ 2.29
UBR3Q6ZT12 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
UBR3Q6ZT12 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
UBR3Q6ZT12 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC29.34■■■□□ 2.29
UBR3Q6ZT12 AL137784.2-201ENST00000607332 1000 ntBASIC29.34■■■□□ 2.29
UBR3Q6ZT12 MPST-208ENST00000628507 698 ntTSL 5 BASIC29.34■■■□□ 2.29
UBR3Q6ZT12 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC29.33■■■□□ 2.29
UBR3Q6ZT12 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC29.33■■■□□ 2.29
UBR3Q6ZT12 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC29.33■■■□□ 2.29
UBR3Q6ZT12 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC29.33■■■□□ 2.29
UBR3Q6ZT12 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
UBR3Q6ZT12 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
UBR3Q6ZT12 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC29.32■■■□□ 2.28
UBR3Q6ZT12 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC29.32■■■□□ 2.28
UBR3Q6ZT12 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC29.31■■■□□ 2.28
UBR3Q6ZT12 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC29.31■■■□□ 2.28
UBR3Q6ZT12 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
UBR3Q6ZT12 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
UBR3Q6ZT12 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC29.31■■■□□ 2.28
UBR3Q6ZT12 AC241377.3-202ENST00000626088 1088 ntBASIC29.31■■■□□ 2.28
UBR3Q6ZT12 AC241585.3-202ENST00000628937 1088 ntBASIC29.31■■■□□ 2.28
UBR3Q6ZT12 AC245100.8-202ENST00000629247 1058 ntBASIC29.31■■■□□ 2.28
UBR3Q6ZT12 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC29.3■■■□□ 2.28
UBR3Q6ZT12 DENND3-207ENST00000518347 850 ntTSL 2 BASIC29.3■■■□□ 2.28
UBR3Q6ZT12 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC29.3■■■□□ 2.28
UBR3Q6ZT12 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC29.3■■■□□ 2.28
UBR3Q6ZT12 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC29.3■■■□□ 2.28
UBR3Q6ZT12 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
UBR3Q6ZT12 YBX1P1-201ENST00000445822 960 ntBASIC29.29■■■□□ 2.28
UBR3Q6ZT12 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC29.29■■■□□ 2.28
UBR3Q6ZT12 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC29.29■■■□□ 2.28
UBR3Q6ZT12 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC29.29■■■□□ 2.28
UBR3Q6ZT12 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
UBR3Q6ZT12 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC29.29■■■□□ 2.28
UBR3Q6ZT12 SLC47A1P1-202ENST00000449666 945 ntBASIC29.29■■■□□ 2.28
UBR3Q6ZT12 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC29.28■■■□□ 2.28
UBR3Q6ZT12 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC29.28■■■□□ 2.28
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms