Protein–RNA interactions for Protein: Q6P087

RPUSD3, Mitochondrial mRNA pseudouridine synthase RPUSD3, humanhuman

Known RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3Q6P087 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RPUSD3Q6P087 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.02■□□□□ 0.96
RPUSD3Q6P087 SF1-220ENST00000626028 704 ntTSL 2 BASIC21.02■□□□□ 0.96
RPUSD3Q6P087 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RPUSD3Q6P087 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC21.02■□□□□ 0.96
RPUSD3Q6P087 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
RPUSD3Q6P087 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.02■□□□□ 0.95
RPUSD3Q6P087 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RPUSD3Q6P087 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
RPUSD3Q6P087 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPUSD3Q6P087 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
RPUSD3Q6P087 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC21.01■□□□□ 0.95
RPUSD3Q6P087 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RPUSD3Q6P087 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
RPUSD3Q6P087 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
RPUSD3Q6P087 ZNRF2P3-201ENST00000424200 374 ntBASIC21.01■□□□□ 0.95
RPUSD3Q6P087 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.01■□□□□ 0.95
RPUSD3Q6P087 AC092171.4-201ENST00000609130 632 ntBASIC21.01■□□□□ 0.95
RPUSD3Q6P087 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RPUSD3Q6P087 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPUSD3Q6P087 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RPUSD3Q6P087 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPUSD3Q6P087 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
RPUSD3Q6P087 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
RPUSD3Q6P087 AC024257.2-201ENST00000549699 147 ntBASIC21■□□□□ 0.95
RPUSD3Q6P087 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RPUSD3Q6P087 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
RPUSD3Q6P087 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RPUSD3Q6P087 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.99■□□□□ 0.95
RPUSD3Q6P087 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RPUSD3Q6P087 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
RPUSD3Q6P087 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
RPUSD3Q6P087 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.99■□□□□ 0.95
RPUSD3Q6P087 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.99■□□□□ 0.95
RPUSD3Q6P087 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RPUSD3Q6P087 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RPUSD3Q6P087 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RPUSD3Q6P087 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC20.98■□□□□ 0.95
RPUSD3Q6P087 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RPUSD3Q6P087 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RPUSD3Q6P087 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RPUSD3Q6P087 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RPUSD3Q6P087 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RPUSD3Q6P087 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.98■□□□□ 0.95
RPUSD3Q6P087 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.98■□□□□ 0.95
RPUSD3Q6P087 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.98■□□□□ 0.95
RPUSD3Q6P087 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.98■□□□□ 0.95
RPUSD3Q6P087 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RPUSD3Q6P087 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RPUSD3Q6P087 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.97■□□□□ 0.95
RPUSD3Q6P087 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.97■□□□□ 0.95
RPUSD3Q6P087 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RPUSD3Q6P087 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
RPUSD3Q6P087 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC20.97■□□□□ 0.95
RPUSD3Q6P087 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
RPUSD3Q6P087 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RPUSD3Q6P087 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RPUSD3Q6P087 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RPUSD3Q6P087 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
RPUSD3Q6P087 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RPUSD3Q6P087 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
RPUSD3Q6P087 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.97■□□□□ 0.95
RPUSD3Q6P087 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RPUSD3Q6P087 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
RPUSD3Q6P087 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
RPUSD3Q6P087 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC20.97■□□□□ 0.95
RPUSD3Q6P087 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RPUSD3Q6P087 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RPUSD3Q6P087 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
RPUSD3Q6P087 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC20.96■□□□□ 0.95
RPUSD3Q6P087 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC20.96■□□□□ 0.95
RPUSD3Q6P087 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.96■□□□□ 0.95
RPUSD3Q6P087 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
RPUSD3Q6P087 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
RPUSD3Q6P087 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.96■□□□□ 0.95
RPUSD3Q6P087 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.96■□□□□ 0.95
RPUSD3Q6P087 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RPUSD3Q6P087 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.96■□□□□ 0.95
RPUSD3Q6P087 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.96■□□□□ 0.95
RPUSD3Q6P087 RARRES2P6-201ENST00000567333 442 ntBASIC20.96■□□□□ 0.95
RPUSD3Q6P087 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
RPUSD3Q6P087 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
RPUSD3Q6P087 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
RPUSD3Q6P087 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RPUSD3Q6P087 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
RPUSD3Q6P087 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
RPUSD3Q6P087 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RPUSD3Q6P087 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
RPUSD3Q6P087 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.95■□□□□ 0.94
RPUSD3Q6P087 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.95■□□□□ 0.94
RPUSD3Q6P087 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
RPUSD3Q6P087 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RPUSD3Q6P087 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
RPUSD3Q6P087 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RPUSD3Q6P087 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.94■□□□□ 0.94
RPUSD3Q6P087 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RPUSD3Q6P087 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.94■□□□□ 0.94
RPUSD3Q6P087 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
RPUSD3Q6P087 AC092803.2-201ENST00000564287 1899 ntBASIC20.94■□□□□ 0.94
RPUSD3Q6P087 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms