Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 KRT18P24-201ENST00000344739 1156 ntBASIC26.66■■□□□ 1.86
KRT40Q6A162 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC26.66■■□□□ 1.86
KRT40Q6A162 AC103724.3-201ENST00000564481 992 ntBASIC26.66■■□□□ 1.86
KRT40Q6A162 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
KRT40Q6A162 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
KRT40Q6A162 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
KRT40Q6A162 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
KRT40Q6A162 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC26.66■■□□□ 1.86
KRT40Q6A162 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
KRT40Q6A162 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
KRT40Q6A162 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
KRT40Q6A162 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
KRT40Q6A162 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC26.65■■□□□ 1.86
KRT40Q6A162 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC26.65■■□□□ 1.86
KRT40Q6A162 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC26.65■■□□□ 1.86
KRT40Q6A162 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
KRT40Q6A162 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
KRT40Q6A162 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
KRT40Q6A162 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
KRT40Q6A162 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC26.64■■□□□ 1.86
KRT40Q6A162 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
KRT40Q6A162 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
KRT40Q6A162 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
KRT40Q6A162 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
KRT40Q6A162 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC26.64■■□□□ 1.86
KRT40Q6A162 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.86
KRT40Q6A162 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
KRT40Q6A162 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC26.64■■□□□ 1.86
KRT40Q6A162 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
KRT40Q6A162 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
KRT40Q6A162 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
KRT40Q6A162 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC26.63■■□□□ 1.85
KRT40Q6A162 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC26.63■■□□□ 1.85
KRT40Q6A162 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC26.63■■□□□ 1.85
KRT40Q6A162 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
KRT40Q6A162 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC26.63■■□□□ 1.85
KRT40Q6A162 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC26.63■■□□□ 1.85
KRT40Q6A162 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC26.62■■□□□ 1.85
KRT40Q6A162 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC26.62■■□□□ 1.85
KRT40Q6A162 AL031848.2-201ENST00000607670 837 ntBASIC26.62■■□□□ 1.85
KRT40Q6A162 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC26.62■■□□□ 1.85
KRT40Q6A162 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
KRT40Q6A162 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC26.61■■□□□ 1.85
KRT40Q6A162 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
KRT40Q6A162 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC26.61■■□□□ 1.85
KRT40Q6A162 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC26.61■■□□□ 1.85
KRT40Q6A162 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
KRT40Q6A162 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC26.6■■□□□ 1.85
KRT40Q6A162 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
KRT40Q6A162 MIR4281-201ENST00000580852 62 ntBASIC26.6■■□□□ 1.85
KRT40Q6A162 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
KRT40Q6A162 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
KRT40Q6A162 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
KRT40Q6A162 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC26.6■■□□□ 1.85
KRT40Q6A162 CD37-213ENST00000598095 1598 ntTSL 2 BASIC26.59■■□□□ 1.85
KRT40Q6A162 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC26.59■■□□□ 1.85
KRT40Q6A162 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
KRT40Q6A162 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
KRT40Q6A162 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
KRT40Q6A162 LSM7-203ENST00000585409 512 ntTSL 2 BASIC26.59■■□□□ 1.85
KRT40Q6A162 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC26.59■■□□□ 1.85
KRT40Q6A162 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC26.59■■□□□ 1.85
KRT40Q6A162 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC26.59■■□□□ 1.85
KRT40Q6A162 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC26.58■■□□□ 1.85
KRT40Q6A162 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
KRT40Q6A162 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC26.58■■□□□ 1.85
KRT40Q6A162 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC26.58■■□□□ 1.85
KRT40Q6A162 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.84
KRT40Q6A162 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC26.57■■□□□ 1.84
KRT40Q6A162 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC26.57■■□□□ 1.84
KRT40Q6A162 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
KRT40Q6A162 AC131274.2-201ENST00000580697 1507 ntBASIC26.57■■□□□ 1.84
KRT40Q6A162 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
KRT40Q6A162 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC26.57■■□□□ 1.84
KRT40Q6A162 AC239859.2-201ENST00000444165 318 ntBASIC26.57■■□□□ 1.84
KRT40Q6A162 AF131216.4-201ENST00000638924 1588 ntBASIC26.57■■□□□ 1.84
KRT40Q6A162 AC008406.3-201ENST00000620001 1374 ntBASIC26.57■■□□□ 1.84
KRT40Q6A162 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC26.57■■□□□ 1.84
KRT40Q6A162 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
KRT40Q6A162 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
KRT40Q6A162 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
KRT40Q6A162 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC26.56■■□□□ 1.84
KRT40Q6A162 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC26.56■■□□□ 1.84
KRT40Q6A162 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
KRT40Q6A162 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
KRT40Q6A162 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC26.55■■□□□ 1.84
KRT40Q6A162 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
KRT40Q6A162 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC26.55■■□□□ 1.84
KRT40Q6A162 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
KRT40Q6A162 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC26.55■■□□□ 1.84
KRT40Q6A162 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
KRT40Q6A162 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC26.54■■□□□ 1.84
KRT40Q6A162 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC26.54■■□□□ 1.84
KRT40Q6A162 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
KRT40Q6A162 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC26.54■■□□□ 1.84
KRT40Q6A162 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC26.54■■□□□ 1.84
KRT40Q6A162 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
KRT40Q6A162 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC26.54■■□□□ 1.84
KRT40Q6A162 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
KRT40Q6A162 AL161729.1-201ENST00000604104 1402 ntBASIC26.54■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms