Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC30.14■■■□□ 2.42
NCBP3Q53F19 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC30.14■■■□□ 2.42
NCBP3Q53F19 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
NCBP3Q53F19 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC30.14■■■□□ 2.42
NCBP3Q53F19 RNF146-205ENST00000477776 762 ntTSL 3 BASIC30.14■■■□□ 2.42
NCBP3Q53F19 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
NCBP3Q53F19 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC30.14■■■□□ 2.41
NCBP3Q53F19 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC30.13■■■□□ 2.41
NCBP3Q53F19 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC30.13■■■□□ 2.41
NCBP3Q53F19 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC30.13■■■□□ 2.41
NCBP3Q53F19 MIR6722-201ENST00000617286 78 ntBASIC30.13■■■□□ 2.41
NCBP3Q53F19 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
NCBP3Q53F19 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC30.13■■■□□ 2.41
NCBP3Q53F19 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC30.13■■■□□ 2.41
NCBP3Q53F19 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
NCBP3Q53F19 EI24-213ENST00000618552 1747 ntTSL 5 BASIC30.13■■■□□ 2.41
NCBP3Q53F19 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
NCBP3Q53F19 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC30.13■■■□□ 2.41
NCBP3Q53F19 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC30.12■■■□□ 2.41
NCBP3Q53F19 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
NCBP3Q53F19 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
NCBP3Q53F19 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
NCBP3Q53F19 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
NCBP3Q53F19 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
NCBP3Q53F19 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC30.11■■■□□ 2.41
NCBP3Q53F19 AC120057.1-201ENST00000483947 663 ntBASIC30.11■■■□□ 2.41
NCBP3Q53F19 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC30.11■■■□□ 2.41
NCBP3Q53F19 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC30.11■■■□□ 2.41
NCBP3Q53F19 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
NCBP3Q53F19 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC30.1■■■□□ 2.41
NCBP3Q53F19 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC30.1■■■□□ 2.41
NCBP3Q53F19 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC30.1■■■□□ 2.41
NCBP3Q53F19 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
NCBP3Q53F19 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
NCBP3Q53F19 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC30.1■■■□□ 2.41
NCBP3Q53F19 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC30.1■■■□□ 2.41
NCBP3Q53F19 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
NCBP3Q53F19 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
NCBP3Q53F19 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
NCBP3Q53F19 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC30.09■■■□□ 2.41
NCBP3Q53F19 AC092028.1-203ENST00000608262 953 ntBASIC30.09■■■□□ 2.41
NCBP3Q53F19 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC30.09■■■□□ 2.41
NCBP3Q53F19 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
NCBP3Q53F19 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC30.09■■■□□ 2.41
NCBP3Q53F19 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC30.09■■■□□ 2.41
NCBP3Q53F19 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC30.09■■■□□ 2.41
NCBP3Q53F19 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
NCBP3Q53F19 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC30.08■■■□□ 2.41
NCBP3Q53F19 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
NCBP3Q53F19 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC30.08■■■□□ 2.41
NCBP3Q53F19 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC30.08■■■□□ 2.41
NCBP3Q53F19 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC30.08■■■□□ 2.41
NCBP3Q53F19 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC30.08■■■□□ 2.41
NCBP3Q53F19 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC30.08■■■□□ 2.41
NCBP3Q53F19 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
NCBP3Q53F19 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC30.07■■■□□ 2.4
NCBP3Q53F19 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC30.07■■■□□ 2.4
NCBP3Q53F19 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC30.07■■■□□ 2.4
NCBP3Q53F19 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC30.07■■■□□ 2.4
NCBP3Q53F19 ALDH1A3-203ENST00000557963 1670 ntBASIC30.07■■■□□ 2.4
NCBP3Q53F19 EI24-204ENST00000527235 1625 ntTSL 5 BASIC30.07■■■□□ 2.4
NCBP3Q53F19 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
NCBP3Q53F19 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
NCBP3Q53F19 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC30.06■■■□□ 2.4
NCBP3Q53F19 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC30.06■■■□□ 2.4
NCBP3Q53F19 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
NCBP3Q53F19 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC30.06■■■□□ 2.4
NCBP3Q53F19 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC30.06■■■□□ 2.4
NCBP3Q53F19 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
NCBP3Q53F19 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
NCBP3Q53F19 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
NCBP3Q53F19 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
NCBP3Q53F19 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
NCBP3Q53F19 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC30.05■■■□□ 2.4
NCBP3Q53F19 AL035685.1-201ENST00000636663 812 ntBASIC30.05■■■□□ 2.4
NCBP3Q53F19 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
NCBP3Q53F19 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
NCBP3Q53F19 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC30.05■■■□□ 2.4
NCBP3Q53F19 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC30.05■■■□□ 2.4
NCBP3Q53F19 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC30.04■■■□□ 2.4
NCBP3Q53F19 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
NCBP3Q53F19 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC30.04■■■□□ 2.4
NCBP3Q53F19 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC30.04■■■□□ 2.4
NCBP3Q53F19 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC30.04■■■□□ 2.4
NCBP3Q53F19 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC30.04■■■□□ 2.4
NCBP3Q53F19 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
NCBP3Q53F19 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC30.04■■■□□ 2.4
NCBP3Q53F19 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
NCBP3Q53F19 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
NCBP3Q53F19 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
NCBP3Q53F19 KRT125P-201ENST00000546827 989 ntBASIC30.03■■■□□ 2.4
NCBP3Q53F19 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC30.03■■■□□ 2.4
NCBP3Q53F19 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
NCBP3Q53F19 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC30.02■■■□□ 2.4
NCBP3Q53F19 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
NCBP3Q53F19 MIR4787-201ENST00000607364 84 ntBASIC30.02■■■□□ 2.4
NCBP3Q53F19 AL589935.2-201ENST00000616471 1231 ntBASIC30.02■■■□□ 2.4
NCBP3Q53F19 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC30.02■■■□□ 2.4
NCBP3Q53F19 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
NCBP3Q53F19 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC30.02■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms