Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC25.42■■□□□ 1.66
PEX3P56589 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC25.42■■□□□ 1.66
PEX3P56589 LSM7-203ENST00000585409 512 ntTSL 2 BASIC25.42■■□□□ 1.66
PEX3P56589 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
PEX3P56589 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
PEX3P56589 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
PEX3P56589 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
PEX3P56589 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC25.41■■□□□ 1.66
PEX3P56589 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
PEX3P56589 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC25.41■■□□□ 1.66
PEX3P56589 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
PEX3P56589 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC25.4■■□□□ 1.66
PEX3P56589 MTDHP2-201ENST00000601468 714 ntBASIC25.4■■□□□ 1.66
PEX3P56589 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC25.4■■□□□ 1.66
PEX3P56589 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC25.4■■□□□ 1.66
PEX3P56589 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC25.4■■□□□ 1.66
PEX3P56589 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.66
PEX3P56589 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
PEX3P56589 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
PEX3P56589 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC25.39■■□□□ 1.66
PEX3P56589 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC25.39■■□□□ 1.66
PEX3P56589 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC25.39■■□□□ 1.66
PEX3P56589 KRT16P3-201ENST00000439127 1283 ntBASIC25.39■■□□□ 1.66
PEX3P56589 AL356441.2-201ENST00000443009 864 ntBASIC25.39■■□□□ 1.66
PEX3P56589 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC25.39■■□□□ 1.66
PEX3P56589 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC25.39■■□□□ 1.66
PEX3P56589 AC010997.5-201ENST00000609182 354 ntBASIC25.39■■□□□ 1.66
PEX3P56589 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
PEX3P56589 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC25.39■■□□□ 1.65
PEX3P56589 CD37-213ENST00000598095 1598 ntTSL 2 BASIC25.39■■□□□ 1.65
PEX3P56589 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
PEX3P56589 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC25.38■■□□□ 1.65
PEX3P56589 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC25.38■■□□□ 1.65
PEX3P56589 GRAMD4P7-201ENST00000578182 1232 ntBASIC25.38■■□□□ 1.65
PEX3P56589 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC25.38■■□□□ 1.65
PEX3P56589 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC25.38■■□□□ 1.65
PEX3P56589 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC25.38■■□□□ 1.65
PEX3P56589 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC25.38■■□□□ 1.65
PEX3P56589 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
PEX3P56589 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC25.37■■□□□ 1.65
PEX3P56589 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
PEX3P56589 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
PEX3P56589 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
PEX3P56589 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC25.37■■□□□ 1.65
PEX3P56589 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
PEX3P56589 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC25.37■■□□□ 1.65
PEX3P56589 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
PEX3P56589 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
PEX3P56589 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC25.37■■□□□ 1.65
PEX3P56589 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PEX3P56589 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PEX3P56589 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC25.36■■□□□ 1.65
PEX3P56589 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC25.36■■□□□ 1.65
PEX3P56589 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC25.36■■□□□ 1.65
PEX3P56589 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PEX3P56589 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PEX3P56589 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
PEX3P56589 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
PEX3P56589 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC25.35■■□□□ 1.65
PEX3P56589 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC25.35■■□□□ 1.65
PEX3P56589 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC25.35■■□□□ 1.65
PEX3P56589 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC25.35■■□□□ 1.65
PEX3P56589 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
PEX3P56589 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
PEX3P56589 PREB-202ENST00000406567 1910 ntTSL 5 BASIC25.35■■□□□ 1.65
PEX3P56589 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC25.35■■□□□ 1.65
PEX3P56589 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC25.35■■□□□ 1.65
PEX3P56589 LINC00543-201ENST00000567234 1845 ntBASIC25.35■■□□□ 1.65
PEX3P56589 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
PEX3P56589 LSM4-201ENST00000252816 986 ntTSL 2 BASIC25.34■■□□□ 1.65
PEX3P56589 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
PEX3P56589 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC25.34■■□□□ 1.65
PEX3P56589 MIR6722-201ENST00000617286 78 ntBASIC25.34■■□□□ 1.65
PEX3P56589 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
PEX3P56589 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC25.34■■□□□ 1.65
PEX3P56589 AL161729.1-201ENST00000604104 1402 ntBASIC25.34■■□□□ 1.65
PEX3P56589 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC25.34■■□□□ 1.65
PEX3P56589 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
PEX3P56589 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
PEX3P56589 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC25.33■■□□□ 1.65
PEX3P56589 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
PEX3P56589 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC25.33■■□□□ 1.65
PEX3P56589 CLTA-206ENST00000466396 695 ntTSL 2 BASIC25.33■■□□□ 1.65
PEX3P56589 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC25.33■■□□□ 1.65
PEX3P56589 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC25.33■■□□□ 1.65
PEX3P56589 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
PEX3P56589 EXOG-217ENST00000630638 197 ntTSL 5 BASIC25.32■■□□□ 1.64
PEX3P56589 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
PEX3P56589 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
PEX3P56589 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
PEX3P56589 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC25.31■■□□□ 1.64
PEX3P56589 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
PEX3P56589 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PEX3P56589 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
PEX3P56589 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
PEX3P56589 CD72-202ENST00000378430 585 ntTSL 3 BASIC25.3■■□□□ 1.64
PEX3P56589 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC25.3■■□□□ 1.64
PEX3P56589 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
PEX3P56589 AC141586.4-201ENST00000624558 1573 ntBASIC25.3■■□□□ 1.64
PEX3P56589 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 90.8 ms