Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
HADHAP40939 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
HADHAP40939 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
HADHAP40939 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
HADHAP40939 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
HADHAP40939 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
HADHAP40939 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC23.2■■□□□ 1.3
HADHAP40939 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC23.2■■□□□ 1.3
HADHAP40939 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
HADHAP40939 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
HADHAP40939 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
HADHAP40939 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC23.19■■□□□ 1.3
HADHAP40939 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
HADHAP40939 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
HADHAP40939 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
HADHAP40939 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
HADHAP40939 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
HADHAP40939 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
HADHAP40939 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC23.18■■□□□ 1.3
HADHAP40939 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC23.18■■□□□ 1.3
HADHAP40939 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC23.18■■□□□ 1.3
HADHAP40939 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
HADHAP40939 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
HADHAP40939 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HADHAP40939 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
HADHAP40939 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HADHAP40939 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HADHAP40939 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC23.17■■□□□ 1.3
HADHAP40939 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC23.17■■□□□ 1.3
HADHAP40939 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
HADHAP40939 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HADHAP40939 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC23.17■■□□□ 1.3
HADHAP40939 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
HADHAP40939 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
HADHAP40939 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
HADHAP40939 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC23.16■■□□□ 1.3
HADHAP40939 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
HADHAP40939 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
HADHAP40939 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
HADHAP40939 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HADHAP40939 AC103724.3-201ENST00000564481 992 ntBASIC23.16■■□□□ 1.3
HADHAP40939 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
HADHAP40939 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
HADHAP40939 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC23.16■■□□□ 1.3
HADHAP40939 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
HADHAP40939 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
HADHAP40939 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
HADHAP40939 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
HADHAP40939 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
HADHAP40939 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
HADHAP40939 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.3
HADHAP40939 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
HADHAP40939 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
HADHAP40939 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
HADHAP40939 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
HADHAP40939 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC23.14■■□□□ 1.29
HADHAP40939 MIR4281-201ENST00000580852 62 ntBASIC23.14■■□□□ 1.29
HADHAP40939 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC23.14■■□□□ 1.29
HADHAP40939 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
HADHAP40939 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
HADHAP40939 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
HADHAP40939 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
HADHAP40939 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
HADHAP40939 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
HADHAP40939 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
HADHAP40939 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC23.13■■□□□ 1.29
HADHAP40939 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
HADHAP40939 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC23.13■■□□□ 1.29
HADHAP40939 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
HADHAP40939 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
HADHAP40939 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
HADHAP40939 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
HADHAP40939 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC23.12■■□□□ 1.29
HADHAP40939 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
HADHAP40939 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
HADHAP40939 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC23.12■■□□□ 1.29
HADHAP40939 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
HADHAP40939 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC23.11■■□□□ 1.29
HADHAP40939 TK2-216ENST00000564917 1156 ntTSL 3 BASIC23.11■■□□□ 1.29
HADHAP40939 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC23.11■■□□□ 1.29
HADHAP40939 AL031848.2-201ENST00000607670 837 ntBASIC23.11■■□□□ 1.29
HADHAP40939 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC23.11■■□□□ 1.29
HADHAP40939 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC23.11■■□□□ 1.29
HADHAP40939 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
HADHAP40939 AC012676.1-201ENST00000574705 1949 ntBASIC23.11■■□□□ 1.29
HADHAP40939 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
HADHAP40939 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
HADHAP40939 DUSP8P5-201ENST00000422884 1815 ntBASIC23.1■■□□□ 1.29
HADHAP40939 ABCB10P4-201ENST00000566803 2184 ntBASIC23.1■■□□□ 1.29
HADHAP40939 AL161729.1-201ENST00000604104 1402 ntBASIC23.1■■□□□ 1.29
HADHAP40939 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC23.1■■□□□ 1.29
HADHAP40939 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HADHAP40939 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC23.1■■□□□ 1.29
HADHAP40939 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
HADHAP40939 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
HADHAP40939 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC23.1■■□□□ 1.29
HADHAP40939 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC23.1■■□□□ 1.29
HADHAP40939 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC23.09■■□□□ 1.29
HADHAP40939 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
HADHAP40939 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 129.3 ms