Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ANOS2P-203ENST00000472227 1816 ntBASIC21.91■■□□□ 1.1
MSX2P35548 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MSX2P35548 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MSX2P35548 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MSX2P35548 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MSX2P35548 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSX2P35548 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC21.9■■□□□ 1.1
MSX2P35548 CR559946.2-201ENST00000623684 991 ntBASIC21.9■■□□□ 1.1
MSX2P35548 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.9■■□□□ 1.1
MSX2P35548 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSX2P35548 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
MSX2P35548 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.9■■□□□ 1.1
MSX2P35548 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
MSX2P35548 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.89■■□□□ 1.09
MSX2P35548 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
MSX2P35548 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
MSX2P35548 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC21.89■■□□□ 1.09
MSX2P35548 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.89■■□□□ 1.09
MSX2P35548 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
MSX2P35548 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
MSX2P35548 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
MSX2P35548 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
MSX2P35548 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSX2P35548 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSX2P35548 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC21.88■■□□□ 1.09
MSX2P35548 RPS2P35-201ENST00000443417 897 ntBASIC21.88■■□□□ 1.09
MSX2P35548 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSX2P35548 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.88■■□□□ 1.09
MSX2P35548 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.88■■□□□ 1.09
MSX2P35548 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
MSX2P35548 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSX2P35548 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.88■■□□□ 1.09
MSX2P35548 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSX2P35548 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSX2P35548 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
MSX2P35548 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.87■■□□□ 1.09
MSX2P35548 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSX2P35548 ZNRF2P2-203ENST00000454624 420 ntBASIC21.87■■□□□ 1.09
MSX2P35548 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.87■■□□□ 1.09
MSX2P35548 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSX2P35548 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSX2P35548 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSX2P35548 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSX2P35548 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSX2P35548 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
MSX2P35548 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
MSX2P35548 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC21.86■■□□□ 1.09
MSX2P35548 MIR3960-201ENST00000583311 91 ntBASIC21.86■■□□□ 1.09
MSX2P35548 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
MSX2P35548 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC21.86■■□□□ 1.09
MSX2P35548 FOXO3B-201ENST00000395675 1928 ntBASIC21.86■■□□□ 1.09
MSX2P35548 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
MSX2P35548 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSX2P35548 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
MSX2P35548 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSX2P35548 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC21.85■■□□□ 1.09
MSX2P35548 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MSX2P35548 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSX2P35548 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.85■■□□□ 1.09
MSX2P35548 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSX2P35548 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSX2P35548 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC21.84■■□□□ 1.09
MSX2P35548 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC21.84■■□□□ 1.09
MSX2P35548 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
MSX2P35548 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSX2P35548 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
MSX2P35548 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSX2P35548 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.84■■□□□ 1.09
MSX2P35548 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSX2P35548 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
MSX2P35548 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC21.83■■□□□ 1.09
MSX2P35548 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.83■■□□□ 1.09
MSX2P35548 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC21.83■■□□□ 1.09
MSX2P35548 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
MSX2P35548 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
MSX2P35548 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
MSX2P35548 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
MSX2P35548 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
MSX2P35548 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.83■■□□□ 1.08
MSX2P35548 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.83■■□□□ 1.08
MSX2P35548 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
MSX2P35548 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
MSX2P35548 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
MSX2P35548 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
MSX2P35548 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
MSX2P35548 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
MSX2P35548 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
MSX2P35548 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSX2P35548 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSX2P35548 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSX2P35548 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSX2P35548 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSX2P35548 AGPS-202ENST00000409888 815 ntTSL 4 BASIC21.82■■□□□ 1.08
MSX2P35548 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC21.82■■□□□ 1.08
MSX2P35548 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
MSX2P35548 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSX2P35548 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSX2P35548 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
MSX2P35548 SMPD5-203ENST00000639008 1464 ntBASIC21.82■■□□□ 1.08
MSX2P35548 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms