Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 AL512631.2-201ENST00000604634 923 ntBASIC24.73■■□□□ 1.55
SCN1AP35498 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
SCN1AP35498 MIR3621-201ENST00000580529 85 ntBASIC24.72■■□□□ 1.55
SCN1AP35498 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC24.72■■□□□ 1.55
SCN1AP35498 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
SCN1AP35498 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC24.72■■□□□ 1.55
SCN1AP35498 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
SCN1AP35498 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
SCN1AP35498 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
SCN1AP35498 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
SCN1AP35498 AC135731.1-201ENST00000569415 2548 ntBASIC24.71■■□□□ 1.55
SCN1AP35498 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC24.7■■□□□ 1.55
SCN1AP35498 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
SCN1AP35498 LSM7-203ENST00000585409 512 ntTSL 2 BASIC24.7■■□□□ 1.54
SCN1AP35498 TRIR-202ENST00000588213 841 ntTSL 3 BASIC24.7■■□□□ 1.54
SCN1AP35498 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC24.7■■□□□ 1.54
SCN1AP35498 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC24.7■■□□□ 1.54
SCN1AP35498 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
SCN1AP35498 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
SCN1AP35498 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
SCN1AP35498 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC24.7■■□□□ 1.54
SCN1AP35498 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
SCN1AP35498 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
SCN1AP35498 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC24.69■■□□□ 1.54
SCN1AP35498 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC24.69■■□□□ 1.54
SCN1AP35498 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
SCN1AP35498 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC24.69■■□□□ 1.54
SCN1AP35498 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
SCN1AP35498 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC24.69■■□□□ 1.54
SCN1AP35498 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
SCN1AP35498 MIR4466-201ENST00000606121 54 ntBASIC24.69■■□□□ 1.54
SCN1AP35498 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
SCN1AP35498 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC24.68■■□□□ 1.54
SCN1AP35498 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
SCN1AP35498 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC24.68■■□□□ 1.54
SCN1AP35498 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
SCN1AP35498 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC24.68■■□□□ 1.54
SCN1AP35498 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC24.68■■□□□ 1.54
SCN1AP35498 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC24.67■■□□□ 1.54
SCN1AP35498 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC24.67■■□□□ 1.54
SCN1AP35498 TMEM202-AS1-202ENST00000565181 2325 ntBASIC24.67■■□□□ 1.54
SCN1AP35498 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC24.67■■□□□ 1.54
SCN1AP35498 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC24.67■■□□□ 1.54
SCN1AP35498 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC24.67■■□□□ 1.54
SCN1AP35498 MIR6722-201ENST00000617286 78 ntBASIC24.67■■□□□ 1.54
SCN1AP35498 RASSF1-AS1-201ENST00000629828 790 ntBASIC24.67■■□□□ 1.54
SCN1AP35498 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC24.66■■□□□ 1.54
SCN1AP35498 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC24.66■■□□□ 1.54
SCN1AP35498 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
SCN1AP35498 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
SCN1AP35498 AL022069.1-201ENST00000568025 1636 ntBASIC24.66■■□□□ 1.54
SCN1AP35498 STK32C-205ENST00000456004 607 ntTSL 2 BASIC24.66■■□□□ 1.54
SCN1AP35498 EED-207ENST00000528180 1745 ntTSL 5 BASIC24.66■■□□□ 1.54
SCN1AP35498 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
SCN1AP35498 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
SCN1AP35498 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC24.65■■□□□ 1.54
SCN1AP35498 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
SCN1AP35498 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
SCN1AP35498 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC24.65■■□□□ 1.54
SCN1AP35498 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC24.65■■□□□ 1.54
SCN1AP35498 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
SCN1AP35498 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
SCN1AP35498 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
SCN1AP35498 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC24.64■■□□□ 1.53
SCN1AP35498 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
SCN1AP35498 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.53
SCN1AP35498 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
SCN1AP35498 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
SCN1AP35498 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
SCN1AP35498 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
SCN1AP35498 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
SCN1AP35498 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
SCN1AP35498 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC24.63■■□□□ 1.53
SCN1AP35498 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC24.63■■□□□ 1.53
SCN1AP35498 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
SCN1AP35498 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
SCN1AP35498 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
SCN1AP35498 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
SCN1AP35498 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
SCN1AP35498 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
SCN1AP35498 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC24.62■■□□□ 1.53
SCN1AP35498 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC24.62■■□□□ 1.53
SCN1AP35498 AK3-203ENST00000447596 705 ntTSL 2 BASIC24.62■■□□□ 1.53
SCN1AP35498 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
SCN1AP35498 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
SCN1AP35498 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
SCN1AP35498 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
SCN1AP35498 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
SCN1AP35498 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
SCN1AP35498 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC24.61■■□□□ 1.53
SCN1AP35498 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC24.61■■□□□ 1.53
SCN1AP35498 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC24.61■■□□□ 1.53
SCN1AP35498 AL356740.2-201ENST00000601559 647 ntBASIC24.61■■□□□ 1.53
SCN1AP35498 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
SCN1AP35498 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
SCN1AP35498 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
SCN1AP35498 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
SCN1AP35498 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
SCN1AP35498 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
SCN1AP35498 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC24.6■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms