Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC24.02■■□□□ 1.44
APOEP02649 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
APOEP02649 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC24.02■■□□□ 1.44
APOEP02649 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
APOEP02649 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC24.01■■□□□ 1.43
APOEP02649 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
APOEP02649 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC24.01■■□□□ 1.43
APOEP02649 TSPY9P-201ENST00000440215 945 ntBASIC24.01■■□□□ 1.43
APOEP02649 TSPY11P-201ENST00000442607 1045 ntBASIC24.01■■□□□ 1.43
APOEP02649 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC24.01■■□□□ 1.43
APOEP02649 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC24.01■■□□□ 1.43
APOEP02649 HLA-L-211ENST00000482052 1765 ntBASIC24.01■■□□□ 1.43
APOEP02649 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC24■■□□□ 1.43
APOEP02649 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC24■■□□□ 1.43
APOEP02649 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC24■■□□□ 1.43
APOEP02649 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC24■■□□□ 1.43
APOEP02649 EED-207ENST00000528180 1745 ntTSL 5 BASIC24■■□□□ 1.43
APOEP02649 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
APOEP02649 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC24■■□□□ 1.43
APOEP02649 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC24■■□□□ 1.43
APOEP02649 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC24■■□□□ 1.43
APOEP02649 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC23.99■■□□□ 1.43
APOEP02649 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
APOEP02649 LSM7-203ENST00000585409 512 ntTSL 2 BASIC23.99■■□□□ 1.43
APOEP02649 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC23.99■■□□□ 1.43
APOEP02649 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
APOEP02649 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC23.99■■□□□ 1.43
APOEP02649 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC23.98■■□□□ 1.43
APOEP02649 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
APOEP02649 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
APOEP02649 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
APOEP02649 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
APOEP02649 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC23.98■■□□□ 1.43
APOEP02649 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC23.97■■□□□ 1.43
APOEP02649 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC23.97■■□□□ 1.43
APOEP02649 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC23.97■■□□□ 1.43
APOEP02649 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC23.97■■□□□ 1.43
APOEP02649 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC23.97■■□□□ 1.43
APOEP02649 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC23.97■■□□□ 1.43
APOEP02649 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC23.97■■□□□ 1.43
APOEP02649 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
APOEP02649 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
APOEP02649 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC23.96■■□□□ 1.43
APOEP02649 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
APOEP02649 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
APOEP02649 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
APOEP02649 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
APOEP02649 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC23.96■■□□□ 1.43
APOEP02649 STK32C-205ENST00000456004 607 ntTSL 2 BASIC23.96■■□□□ 1.43
APOEP02649 UNC93B8-201ENST00000511903 705 ntBASIC23.96■■□□□ 1.43
APOEP02649 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC23.96■■□□□ 1.43
APOEP02649 MTDHP2-201ENST00000601468 714 ntBASIC23.96■■□□□ 1.43
APOEP02649 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC23.96■■□□□ 1.43
APOEP02649 LINC01124-201ENST00000409786 2117 ntBASIC23.96■■□□□ 1.43
APOEP02649 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
APOEP02649 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
APOEP02649 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
APOEP02649 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.43
APOEP02649 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
APOEP02649 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
APOEP02649 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC23.95■■□□□ 1.42
APOEP02649 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
APOEP02649 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC23.95■■□□□ 1.42
APOEP02649 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
APOEP02649 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC23.95■■□□□ 1.42
APOEP02649 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC23.95■■□□□ 1.42
APOEP02649 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC23.95■■□□□ 1.42
APOEP02649 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
APOEP02649 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC23.95■■□□□ 1.42
APOEP02649 CLTA-210ENST00000540080 989 ntTSL 2 BASIC23.95■■□□□ 1.42
APOEP02649 SNX5-217ENST00000606557 1087 ntBASIC23.95■■□□□ 1.42
APOEP02649 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
APOEP02649 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
APOEP02649 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC23.95■■□□□ 1.42
APOEP02649 AL022069.1-201ENST00000568025 1636 ntBASIC23.95■■□□□ 1.42
APOEP02649 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC23.95■■□□□ 1.42
APOEP02649 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC23.94■■□□□ 1.42
APOEP02649 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC23.94■■□□□ 1.42
APOEP02649 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC23.94■■□□□ 1.42
APOEP02649 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC23.94■■□□□ 1.42
APOEP02649 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
APOEP02649 KRT16P3-201ENST00000439127 1283 ntBASIC23.94■■□□□ 1.42
APOEP02649 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC23.94■■□□□ 1.42
APOEP02649 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
APOEP02649 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
APOEP02649 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC23.94■■□□□ 1.42
APOEP02649 TMEM202-AS1-202ENST00000565181 2325 ntBASIC23.94■■□□□ 1.42
APOEP02649 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
APOEP02649 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
APOEP02649 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
APOEP02649 AL356441.2-201ENST00000443009 864 ntBASIC23.93■■□□□ 1.42
APOEP02649 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC23.93■■□□□ 1.42
APOEP02649 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC23.93■■□□□ 1.42
APOEP02649 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC23.93■■□□□ 1.42
APOEP02649 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC23.93■■□□□ 1.42
APOEP02649 AC131274.2-201ENST00000580697 1507 ntBASIC23.93■■□□□ 1.42
APOEP02649 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
APOEP02649 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
APOEP02649 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
APOEP02649 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms