Protein–RNA interactions for Protein: O43924

PDE6D, Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta, humanhuman

Predictions only

Length 150 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDE6DO43924 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
PDE6DO43924 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PDE6DO43924 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
PDE6DO43924 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
PDE6DO43924 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
PDE6DO43924 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PDE6DO43924 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PDE6DO43924 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PDE6DO43924 AC008813.1-201ENST00000536597 885 ntBASIC17.81■□□□□ 0.44
PDE6DO43924 MIR3665-201ENST00000578708 105 ntBASIC17.81■□□□□ 0.44
PDE6DO43924 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PDE6DO43924 WWC2-AS2-201ENST00000578387 2183 ntBASIC17.81■□□□□ 0.44
PDE6DO43924 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
PDE6DO43924 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PDE6DO43924 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PDE6DO43924 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PDE6DO43924 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
PDE6DO43924 LSR-203ENST00000360798 1963 ntTSL 2 BASIC17.8■□□□□ 0.44
PDE6DO43924 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PDE6DO43924 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC17.8■□□□□ 0.44
PDE6DO43924 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PDE6DO43924 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC17.8■□□□□ 0.44
PDE6DO43924 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PDE6DO43924 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC17.8■□□□□ 0.44
PDE6DO43924 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PDE6DO43924 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PDE6DO43924 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PDE6DO43924 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PDE6DO43924 AC092068.2-201ENST00000590491 1708 ntBASIC17.8■□□□□ 0.44
PDE6DO43924 FOXO3B-201ENST00000395675 1928 ntBASIC17.8■□□□□ 0.44
PDE6DO43924 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PDE6DO43924 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PDE6DO43924 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PDE6DO43924 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC17.79■□□□□ 0.44
PDE6DO43924 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PDE6DO43924 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC17.79■□□□□ 0.44
PDE6DO43924 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
PDE6DO43924 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PDE6DO43924 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC17.79■□□□□ 0.44
PDE6DO43924 AC148477.6-201ENST00000623746 465 ntBASIC17.79■□□□□ 0.44
PDE6DO43924 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC17.79■□□□□ 0.44
PDE6DO43924 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PDE6DO43924 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC17.79■□□□□ 0.44
PDE6DO43924 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PDE6DO43924 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PDE6DO43924 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PDE6DO43924 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
PDE6DO43924 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PDE6DO43924 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PDE6DO43924 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PDE6DO43924 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PDE6DO43924 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
PDE6DO43924 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PDE6DO43924 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC17.77■□□□□ 0.44
PDE6DO43924 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC17.77■□□□□ 0.44
PDE6DO43924 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PDE6DO43924 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PDE6DO43924 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PDE6DO43924 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PDE6DO43924 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PDE6DO43924 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PDE6DO43924 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PDE6DO43924 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PDE6DO43924 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
PDE6DO43924 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PDE6DO43924 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
PDE6DO43924 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
PDE6DO43924 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
PDE6DO43924 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
PDE6DO43924 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PDE6DO43924 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
PDE6DO43924 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC17.77■□□□□ 0.43
PDE6DO43924 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
PDE6DO43924 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PDE6DO43924 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PDE6DO43924 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC17.76■□□□□ 0.43
PDE6DO43924 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC17.76■□□□□ 0.43
PDE6DO43924 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PDE6DO43924 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PDE6DO43924 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PDE6DO43924 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PDE6DO43924 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PDE6DO43924 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PDE6DO43924 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PDE6DO43924 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PDE6DO43924 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PDE6DO43924 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PDE6DO43924 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PDE6DO43924 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PDE6DO43924 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
PDE6DO43924 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
PDE6DO43924 TERT-206ENST00000508104 2486 ntTSL 5 BASIC17.75■□□□□ 0.43
PDE6DO43924 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
PDE6DO43924 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PDE6DO43924 AC007375.3-201ENST00000600936 2314 ntBASIC17.75■□□□□ 0.43
PDE6DO43924 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PDE6DO43924 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PDE6DO43924 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
PDE6DO43924 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PDE6DO43924 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms