Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PDLIM1O00151 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PDLIM1O00151 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PDLIM1O00151 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
PDLIM1O00151 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PDLIM1O00151 EP400NL-214ENST00000641289 2402 ntBASIC21.77■■□□□ 1.08
PDLIM1O00151 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
PDLIM1O00151 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
PDLIM1O00151 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PDLIM1O00151 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
PDLIM1O00151 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.76■■□□□ 1.07
PDLIM1O00151 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PDLIM1O00151 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.76■■□□□ 1.07
PDLIM1O00151 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
PDLIM1O00151 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
PDLIM1O00151 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC21.75■■□□□ 1.07
PDLIM1O00151 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.75■■□□□ 1.07
PDLIM1O00151 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PDLIM1O00151 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PDLIM1O00151 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
PDLIM1O00151 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC21.75■■□□□ 1.07
PDLIM1O00151 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PDLIM1O00151 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PDLIM1O00151 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PDLIM1O00151 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PDLIM1O00151 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PDLIM1O00151 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
PDLIM1O00151 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PDLIM1O00151 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
PDLIM1O00151 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PDLIM1O00151 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
PDLIM1O00151 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.74■■□□□ 1.07
PDLIM1O00151 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
PDLIM1O00151 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC21.74■■□□□ 1.07
PDLIM1O00151 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PDLIM1O00151 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PDLIM1O00151 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.73■■□□□ 1.07
PDLIM1O00151 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PDLIM1O00151 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PDLIM1O00151 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.73■■□□□ 1.07
PDLIM1O00151 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PDLIM1O00151 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PDLIM1O00151 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PDLIM1O00151 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PDLIM1O00151 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PDLIM1O00151 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PDLIM1O00151 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PDLIM1O00151 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PDLIM1O00151 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.72■■□□□ 1.07
PDLIM1O00151 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PDLIM1O00151 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.72■■□□□ 1.07
PDLIM1O00151 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.72■■□□□ 1.07
PDLIM1O00151 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.72■■□□□ 1.07
PDLIM1O00151 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PDLIM1O00151 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.72■■□□□ 1.07
PDLIM1O00151 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.72■■□□□ 1.07
PDLIM1O00151 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
PDLIM1O00151 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PDLIM1O00151 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PDLIM1O00151 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PDLIM1O00151 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PDLIM1O00151 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
PDLIM1O00151 AC025884.2-201ENST00000553429 711 ntBASIC21.71■■□□□ 1.07
PDLIM1O00151 MIR6089-201ENST00000616698 64 ntBASIC21.71■■□□□ 1.07
PDLIM1O00151 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PDLIM1O00151 AC233723.2-201ENST00000623798 2106 ntBASIC21.71■■□□□ 1.07
PDLIM1O00151 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
PDLIM1O00151 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.71■■□□□ 1.07
PDLIM1O00151 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PDLIM1O00151 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
PDLIM1O00151 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.71■■□□□ 1.07
PDLIM1O00151 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.07
PDLIM1O00151 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
PDLIM1O00151 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
PDLIM1O00151 RNF165-205ENST00000588679 2904 ntBASIC21.7■■□□□ 1.06
PDLIM1O00151 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PDLIM1O00151 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PDLIM1O00151 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
PDLIM1O00151 AC137767.1-201ENST00000602918 1920 ntBASIC21.7■■□□□ 1.06
PDLIM1O00151 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PDLIM1O00151 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PDLIM1O00151 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
PDLIM1O00151 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PDLIM1O00151 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
PDLIM1O00151 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PDLIM1O00151 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
PDLIM1O00151 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
PDLIM1O00151 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.68■■□□□ 1.06
PDLIM1O00151 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC21.68■■□□□ 1.06
PDLIM1O00151 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC21.68■■□□□ 1.06
PDLIM1O00151 HLA-L-211ENST00000482052 1765 ntBASIC21.68■■□□□ 1.06
PDLIM1O00151 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.68■■□□□ 1.06
PDLIM1O00151 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PDLIM1O00151 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
PDLIM1O00151 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PDLIM1O00151 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PDLIM1O00151 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PDLIM1O00151 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.67■■□□□ 1.06
PDLIM1O00151 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PDLIM1O00151 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.67■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms