Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC16.48■□□□□ 0.23
TRAV4A0A0B4J268 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV4A0A0B4J268 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC16.48■□□□□ 0.23
TRAV4A0A0B4J268 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV4A0A0B4J268 AL161729.1-201ENST00000604104 1402 ntBASIC16.48■□□□□ 0.23
TRAV4A0A0B4J268 AC004987.1-201ENST00000428627 508 ntBASIC16.48■□□□□ 0.23
TRAV4A0A0B4J268 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC16.48■□□□□ 0.23
TRAV4A0A0B4J268 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV4A0A0B4J268 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV4A0A0B4J268 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV4A0A0B4J268 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV4A0A0B4J268 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV4A0A0B4J268 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
TRAV4A0A0B4J268 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC16.48■□□□□ 0.23
TRAV4A0A0B4J268 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
TRAV4A0A0B4J268 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV4A0A0B4J268 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV4A0A0B4J268 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV4A0A0B4J268 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
TRAV4A0A0B4J268 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV4A0A0B4J268 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC16.47■□□□□ 0.23
TRAV4A0A0B4J268 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV4A0A0B4J268 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV4A0A0B4J268 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV4A0A0B4J268 TSPY13P-201ENST00000338964 914 ntBASIC16.47■□□□□ 0.23
TRAV4A0A0B4J268 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
TRAV4A0A0B4J268 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
TRAV4A0A0B4J268 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV4A0A0B4J268 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV4A0A0B4J268 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
TRAV4A0A0B4J268 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
TRAV4A0A0B4J268 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV4A0A0B4J268 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV4A0A0B4J268 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC16.47■□□□□ 0.23
TRAV4A0A0B4J268 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV4A0A0B4J268 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV4A0A0B4J268 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV4A0A0B4J268 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV4A0A0B4J268 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV4A0A0B4J268 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV4A0A0B4J268 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV4A0A0B4J268 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV4A0A0B4J268 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV4A0A0B4J268 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
TRAV4A0A0B4J268 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
TRAV4A0A0B4J268 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV4A0A0B4J268 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV4A0A0B4J268 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV4A0A0B4J268 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV4A0A0B4J268 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV4A0A0B4J268 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
TRAV4A0A0B4J268 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV4A0A0B4J268 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV4A0A0B4J268 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV4A0A0B4J268 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV4A0A0B4J268 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC16.45■□□□□ 0.22
TRAV4A0A0B4J268 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC16.45■□□□□ 0.22
TRAV4A0A0B4J268 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV4A0A0B4J268 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV4A0A0B4J268 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV4A0A0B4J268 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV4A0A0B4J268 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
TRAV4A0A0B4J268 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV4A0A0B4J268 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV4A0A0B4J268 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC16.45■□□□□ 0.22
TRAV4A0A0B4J268 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV4A0A0B4J268 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV4A0A0B4J268 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV4A0A0B4J268 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV4A0A0B4J268 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV4A0A0B4J268 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV4A0A0B4J268 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC16.44■□□□□ 0.22
TRAV4A0A0B4J268 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC16.44■□□□□ 0.22
TRAV4A0A0B4J268 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC16.44■□□□□ 0.22
TRAV4A0A0B4J268 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV4A0A0B4J268 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV4A0A0B4J268 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV4A0A0B4J268 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV4A0A0B4J268 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC16.44■□□□□ 0.22
TRAV4A0A0B4J268 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV4A0A0B4J268 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV4A0A0B4J268 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
TRAV4A0A0B4J268 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV4A0A0B4J268 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV4A0A0B4J268 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV4A0A0B4J268 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV4A0A0B4J268 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV4A0A0B4J268 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV4A0A0B4J268 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV4A0A0B4J268 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV4A0A0B4J268 IDNK-201ENST00000376417 511 ntTSL 5 BASIC16.43■□□□□ 0.22
TRAV4A0A0B4J268 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV4A0A0B4J268 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC16.43■□□□□ 0.22
TRAV4A0A0B4J268 AC012354.3-201ENST00000623734 483 ntBASIC16.43■□□□□ 0.22
TRAV4A0A0B4J268 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV4A0A0B4J268 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV4A0A0B4J268 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC16.43■□□□□ 0.22
TRAV4A0A0B4J268 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
TRAV4A0A0B4J268 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
TRAV4A0A0B4J268 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms