Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 AL139094.1-201ENST00000405549 1188 ntBASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 AC004890.2-204ENST00000481968 304 ntBASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 DUX4L27-201ENST00000554796 1261 ntBASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 AC079781.4-201ENST00000641908 219 ntBASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIMA1Q9UHB6 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 AL359881.3-201ENST00000602640 1721 ntBASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 AC011474.4-201ENST00000623523 2076 ntBASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 GOLGA8VP-201ENST00000559009 1798 ntBASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 MYO15B-237ENST00000642007 4893 ntBASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC16.5■□□□□ 0.23
LIMA1Q9UHB6 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIMA1Q9UHB6 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LIMA1Q9UHB6 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
LIMA1Q9UHB6 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LIMA1Q9UHB6 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC16.49■□□□□ 0.23
LIMA1Q9UHB6 ARHGAP23P1-201ENST00000562773 1937 ntBASIC16.49■□□□□ 0.23
LIMA1Q9UHB6 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
LIMA1Q9UHB6 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
LIMA1Q9UHB6 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
LIMA1Q9UHB6 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
LIMA1Q9UHB6 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIMA1Q9UHB6 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIMA1Q9UHB6 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIMA1Q9UHB6 LSM5-207ENST00000410044 687 ntTSL 3 BASIC16.49■□□□□ 0.23
LIMA1Q9UHB6 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC16.49■□□□□ 0.23
LIMA1Q9UHB6 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.49■□□□□ 0.23
LIMA1Q9UHB6 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.49■□□□□ 0.23
LIMA1Q9UHB6 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.49■□□□□ 0.23
LIMA1Q9UHB6 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
LIMA1Q9UHB6 GLI4-203ENST00000517468 963 ntTSL 5 BASIC16.49■□□□□ 0.23
LIMA1Q9UHB6 IGHV3-42-201ENST00000520410 361 ntBASIC16.49■□□□□ 0.23
LIMA1Q9UHB6 CALM1-205ENST00000553542 877 ntTSL 5 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 309.2 ms