Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
MMP28Q9H239 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC13.46□□□□□ -0.25
MMP28Q9H239 AC004899.2-201ENST00000622993 3860 ntBASIC13.46□□□□□ -0.25
MMP28Q9H239 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
MMP28Q9H239 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
MMP28Q9H239 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
MMP28Q9H239 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC13.46□□□□□ -0.25
MMP28Q9H239 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC13.46□□□□□ -0.25
MMP28Q9H239 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
MMP28Q9H239 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
MMP28Q9H239 LBH-203ENST00000404397 543 ntTSL 4 BASIC13.46□□□□□ -0.25
MMP28Q9H239 VMO1-203ENST00000416307 712 ntTSL 2 BASIC13.46□□□□□ -0.25
MMP28Q9H239 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC13.46□□□□□ -0.25
MMP28Q9H239 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC13.46□□□□□ -0.25
MMP28Q9H239 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC13.46□□□□□ -0.25
MMP28Q9H239 ALG1L5P-201ENST00000482043 771 ntBASIC13.46□□□□□ -0.25
MMP28Q9H239 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC13.46□□□□□ -0.25
MMP28Q9H239 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC13.46□□□□□ -0.25
MMP28Q9H239 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC13.46□□□□□ -0.25
MMP28Q9H239 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
MMP28Q9H239 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC13.46□□□□□ -0.25
MMP28Q9H239 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
MMP28Q9H239 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC13.46□□□□□ -0.25
MMP28Q9H239 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
MMP28Q9H239 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC13.46□□□□□ -0.25
MMP28Q9H239 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
MMP28Q9H239 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
MMP28Q9H239 AC091812.2-201ENST00000619081 385 ntBASIC13.46□□□□□ -0.25
MMP28Q9H239 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
MMP28Q9H239 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
MMP28Q9H239 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
MMP28Q9H239 AC023090.2-201ENST00000625182 2110 ntBASIC13.46□□□□□ -0.26
MMP28Q9H239 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
MMP28Q9H239 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC13.46□□□□□ -0.26
MMP28Q9H239 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
MMP28Q9H239 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.26
MMP28Q9H239 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
MMP28Q9H239 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.26
MMP28Q9H239 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
MMP28Q9H239 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC13.46□□□□□ -0.26
MMP28Q9H239 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
MMP28Q9H239 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
MMP28Q9H239 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC13.46□□□□□ -0.26
MMP28Q9H239 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC13.46□□□□□ -0.26
MMP28Q9H239 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC13.46□□□□□ -0.26
MMP28Q9H239 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.26
MMP28Q9H239 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC13.46□□□□□ -0.26
MMP28Q9H239 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC13.46□□□□□ -0.26
MMP28Q9H239 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
MMP28Q9H239 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
MMP28Q9H239 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
MMP28Q9H239 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC13.45□□□□□ -0.26
MMP28Q9H239 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC13.45□□□□□ -0.26
MMP28Q9H239 CICP11-201ENST00000434745 2827 ntBASIC13.45□□□□□ -0.26
MMP28Q9H239 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
MMP28Q9H239 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC13.45□□□□□ -0.26
MMP28Q9H239 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
MMP28Q9H239 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
MMP28Q9H239 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC13.45□□□□□ -0.26
MMP28Q9H239 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
MMP28Q9H239 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC13.45□□□□□ -0.26
MMP28Q9H239 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC13.45□□□□□ -0.26
MMP28Q9H239 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC13.45□□□□□ -0.26
MMP28Q9H239 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
MMP28Q9H239 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC13.45□□□□□ -0.26
MMP28Q9H239 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
MMP28Q9H239 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC13.45□□□□□ -0.26
MMP28Q9H239 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC13.45□□□□□ -0.26
MMP28Q9H239 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
MMP28Q9H239 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
MMP28Q9H239 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
MMP28Q9H239 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
MMP28Q9H239 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
MMP28Q9H239 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC13.45□□□□□ -0.26
MMP28Q9H239 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC13.45□□□□□ -0.26
MMP28Q9H239 FAM58CP-201ENST00000435741 640 ntBASIC13.45□□□□□ -0.26
MMP28Q9H239 AP006288.1-201ENST00000446065 395 ntBASIC13.45□□□□□ -0.26
MMP28Q9H239 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC13.45□□□□□ -0.26
MMP28Q9H239 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC13.45□□□□□ -0.26
MMP28Q9H239 SNHG9-202ENST00000564014 471 ntBASIC13.45□□□□□ -0.26
MMP28Q9H239 MIR4469-201ENST00000583919 79 ntBASIC13.45□□□□□ -0.26
MMP28Q9H239 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC13.45□□□□□ -0.26
MMP28Q9H239 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
MMP28Q9H239 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC13.45□□□□□ -0.26
MMP28Q9H239 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
MMP28Q9H239 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
MMP28Q9H239 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
MMP28Q9H239 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC13.45□□□□□ -0.26
MMP28Q9H239 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
MMP28Q9H239 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
MMP28Q9H239 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
MMP28Q9H239 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
MMP28Q9H239 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC13.45□□□□□ -0.26
MMP28Q9H239 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
MMP28Q9H239 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
MMP28Q9H239 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.45□□□□□ -0.26
MMP28Q9H239 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC13.45□□□□□ -0.26
MMP28Q9H239 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC13.45□□□□□ -0.26
MMP28Q9H239 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC13.45□□□□□ -0.26
MMP28Q9H239 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC13.45□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms