Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 EMD-201ENST00000369835 966 ntTSL 3 BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 RBM17P3-201ENST00000417687 1192 ntBASIC14.3□□□□□ -0.12
NR1H4Q96RI1 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 MSRA-206ENST00000521209 814 ntTSL 3 BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 TPM1-218ENST00000559281 851 ntTSL 5 BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 AL450472.2-201ENST00000603663 1156 ntBASIC14.3□□□□□ -0.12
NR1H4Q96RI1 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 AL139288.1-201ENST00000623748 933 ntBASIC14.3□□□□□ -0.12
NR1H4Q96RI1 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 GOLGA2P9-201ENST00000596977 1937 ntBASIC14.3□□□□□ -0.12
NR1H4Q96RI1 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 SEZ6L-203ENST00000360929 6307 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.3□□□□□ -0.12
NR1H4Q96RI1 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 TGM1-201ENST00000206765 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 REXO1L1P-201ENST00000379010 6598 ntBASIC14.29□□□□□ -0.12
NR1H4Q96RI1 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 MDM1-201ENST00000303145 2918 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 HOXA7-201ENST00000242159 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 TLL2-201ENST00000357947 6756 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 DFFB-203ENST00000341385 572 ntTSL 5 BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 RNU1-129P-201ENST00000384064 167 ntBASIC14.29□□□□□ -0.12
NR1H4Q96RI1 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 KRT18P31-201ENST00000506277 1292 ntBASIC14.29□□□□□ -0.12
NR1H4Q96RI1 AC091304.2-201ENST00000564639 760 ntBASIC14.29□□□□□ -0.12
NR1H4Q96RI1 PRELID1P1-202ENST00000567272 903 ntBASIC14.29□□□□□ -0.12
NR1H4Q96RI1 AC139887.3-201ENST00000568585 713 ntBASIC14.29□□□□□ -0.12
NR1H4Q96RI1 U1.21-201ENST00000580816 167 ntBASIC14.29□□□□□ -0.12
NR1H4Q96RI1 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 MTDHP4-201ENST00000600287 670 ntBASIC14.29□□□□□ -0.12
NR1H4Q96RI1 AC008608.2-201ENST00000606089 416 ntBASIC14.29□□□□□ -0.12
NR1H4Q96RI1 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 AC007787.1-201ENST00000588095 1583 ntBASIC14.29□□□□□ -0.12
NR1H4Q96RI1 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 MANBAL-201ENST00000373605 1915 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 ENO2-214ENST00000545045 1911 ntTSL 5 BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 AL354702.1-201ENST00000442006 1960 ntBASIC14.29□□□□□ -0.12
NR1H4Q96RI1 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 FAM189A2-204ENST00000455972 2107 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 UBE3A-226ENST00000637886 8725 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NR1H4Q96RI1 ADD2-202ENST00000355733 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms