Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 REXO1L2P-201ENST00000425429 2069 ntBASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP4CQ96CF2 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 CICP4-201ENST00000447359 2812 ntBASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 AC026410.3-201ENST00000514280 936 ntBASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 METTL26-214ENST00000614890 801 ntTSL 3 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CHMP4CQ96CF2 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CHMP4CQ96CF2 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC18.08■□□□□ 0.49
CHMP4CQ96CF2 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CHMP4CQ96CF2 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CHMP4CQ96CF2 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CHMP4CQ96CF2 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CHMP4CQ96CF2 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CHMP4CQ96CF2 PCDHGB8P-201ENST00000502926 1973 ntBASIC18.08■□□□□ 0.49
CHMP4CQ96CF2 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC18.08■□□□□ 0.49
CHMP4CQ96CF2 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CHMP4CQ96CF2 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CHMP4CQ96CF2 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CHMP4CQ96CF2 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CHMP4CQ96CF2 AC134312.5-201ENST00000568031 1313 ntBASIC18.08■□□□□ 0.49
CHMP4CQ96CF2 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 ACTG1P3-201ENST00000431775 1114 ntBASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 RPL13AP25-201ENST00000484130 612 ntBASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 AC119751.2-201ENST00000504529 210 ntBASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 IFT20-206ENST00000578122 834 ntTSL 2 BASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 IFT20-208ENST00000578985 831 ntTSL 3 BASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 INO80C-210ENST00000590757 595 ntTSL 2 BASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 AL359881.2-201ENST00000602973 570 ntBASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 AC244669.2-201ENST00000612320 853 ntBASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 AC091951.1-201ENST00000512854 2465 ntBASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 PDIA3P1-201ENST00000471856 1510 ntBASIC18.08■□□□□ 0.48
CHMP4CQ96CF2 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP4CQ96CF2 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms