Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 LILRP1-201ENST00000444199 1370 ntBASIC20.11■□□□□ 0.81
NPHP3Q7Z494 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC20.11■□□□□ 0.81
NPHP3Q7Z494 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 NME2-201ENST00000393183 568 ntTSL 2 BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 GUSBP10-201ENST00000417412 665 ntBASIC20.11■□□□□ 0.81
NPHP3Q7Z494 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 DPY19L2P5-201ENST00000456300 331 ntBASIC20.11■□□□□ 0.81
NPHP3Q7Z494 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 RPS23-204ENST00000507980 836 ntTSL 2 BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 AP003392.6-201ENST00000607709 325 ntBASIC20.11■□□□□ 0.81
NPHP3Q7Z494 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP3Q7Z494 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 AL512306.1-201ENST00000432698 848 ntBASIC20.1■□□□□ 0.81
NPHP3Q7Z494 AC003686.1-201ENST00000550956 1034 ntBASIC20.1■□□□□ 0.81
NPHP3Q7Z494 AC138701.2-201ENST00000553634 226 ntBASIC20.1■□□□□ 0.81
NPHP3Q7Z494 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 AP000322.3-201ENST00000608665 388 ntBASIC20.1■□□□□ 0.81
NPHP3Q7Z494 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 SUPT20HL2-201ENST00000486479 2409 ntBASIC20.1■□□□□ 0.81
NPHP3Q7Z494 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP3Q7Z494 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC20.09■□□□□ 0.81
NPHP3Q7Z494 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP3Q7Z494 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP3Q7Z494 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP3Q7Z494 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP3Q7Z494 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC20.09■□□□□ 0.81
NPHP3Q7Z494 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC20.09■□□□□ 0.81
NPHP3Q7Z494 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP3Q7Z494 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP3Q7Z494 MDH2-205ENST00000461263 648 ntTSL 2 BASIC20.09■□□□□ 0.81
NPHP3Q7Z494 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP3Q7Z494 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC20.09■□□□□ 0.81
NPHP3Q7Z494 AC148477.9-201ENST00000623974 539 ntBASIC20.09■□□□□ 0.81
NPHP3Q7Z494 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP3Q7Z494 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP3Q7Z494 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP3Q7Z494 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC20.09■□□□□ 0.81
NPHP3Q7Z494 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
NPHP3Q7Z494 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC20.09■□□□□ 0.81
NPHP3Q7Z494 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC20.09■□□□□ 0.81
NPHP3Q7Z494 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
NPHP3Q7Z494 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC20.09■□□□□ 0.81
NPHP3Q7Z494 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC20.09■□□□□ 0.81
NPHP3Q7Z494 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP3Q7Z494 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP3Q7Z494 CICP13-201ENST00000422015 2789 ntBASIC20.09■□□□□ 0.81
NPHP3Q7Z494 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP3Q7Z494 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms