Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC10.5□□□□□ -0.73
PRKDCP78527 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC10.5□□□□□ -0.73
PRKDCP78527 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC10.5□□□□□ -0.73
PRKDCP78527 AC117503.4-201ENST00000623229 1418 ntBASIC10.5□□□□□ -0.73
PRKDCP78527 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC10.5□□□□□ -0.73
PRKDCP78527 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC10.5□□□□□ -0.73
PRKDCP78527 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 EXOSC7-201ENST00000265564 1055 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC10.5□□□□□ -0.73
PRKDCP78527 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC10.5□□□□□ -0.73
PRKDCP78527 LINC01823-204ENST00000438722 794 ntTSL 3 BASIC10.5□□□□□ -0.73
PRKDCP78527 LINC00643-202ENST00000553426 526 ntTSL 3 BASIC10.5□□□□□ -0.73
PRKDCP78527 CLPP-205ENST00000596605 646 ntTSL 2 BASIC10.5□□□□□ -0.73
PRKDCP78527 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
PRKDCP78527 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC10.49□□□□□ -0.73
PRKDCP78527 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC10.49□□□□□ -0.73
PRKDCP78527 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
PRKDCP78527 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
PRKDCP78527 RN7SL767P-201ENST00000493013 295 ntBASIC10.49□□□□□ -0.73
PRKDCP78527 ISL1-203ENST00000511384 981 ntTSL 5 BASIC10.49□□□□□ -0.73
PRKDCP78527 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC10.49□□□□□ -0.73
PRKDCP78527 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC10.49□□□□□ -0.73
PRKDCP78527 ERAS-202ENST00000636362 826 ntAPPRIS P1 TSL 3 BASIC10.49□□□□□ -0.73
PRKDCP78527 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC10.49□□□□□ -0.73
PRKDCP78527 AC080080.1-201ENST00000625121 2420 ntBASIC10.49□□□□□ -0.73
PRKDCP78527 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
PRKDCP78527 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
PRKDCP78527 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
PRKDCP78527 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
PRKDCP78527 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC10.49□□□□□ -0.73
PRKDCP78527 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC10.49□□□□□ -0.73
PRKDCP78527 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC10.49□□□□□ -0.73
PRKDCP78527 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
PRKDCP78527 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC10.49□□□□□ -0.73
PRKDCP78527 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
PRKDCP78527 CHCHD1-202ENST00000372837 1202 ntTSL 2 BASIC10.49□□□□□ -0.73
PRKDCP78527 NRADDP-201ENST00000437305 691 ntBASIC10.49□□□□□ -0.73
PRKDCP78527 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC10.49□□□□□ -0.73
PRKDCP78527 AC103563.2-201ENST00000442200 597 ntTSL 5 BASIC10.49□□□□□ -0.73
PRKDCP78527 AC095040.1-201ENST00000513286 675 ntBASIC10.49□□□□□ -0.73
PRKDCP78527 GLIPR1L2-203ENST00000547164 509 ntTSL 5 BASIC10.49□□□□□ -0.73
PRKDCP78527 KRT8P34-201ENST00000577607 1044 ntBASIC10.49□□□□□ -0.73
PRKDCP78527 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC10.49□□□□□ -0.73
PRKDCP78527 ACTBP9-201ENST00000587663 1099 ntBASIC10.49□□□□□ -0.73
PRKDCP78527 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC10.49□□□□□ -0.73
PRKDCP78527 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
PRKDCP78527 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
PRKDCP78527 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
PRKDCP78527 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
PRKDCP78527 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC10.49□□□□□ -0.73
PRKDCP78527 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC10.49□□□□□ -0.73
PRKDCP78527 HYKK-201ENST00000388988 1235 ntAPPRIS P1 TSL 5 BASIC10.49□□□□□ -0.73
PRKDCP78527 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC10.49□□□□□ -0.73
PRKDCP78527 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC10.49□□□□□ -0.73
PRKDCP78527 FAM86JP-202ENST00000484500 988 ntBASIC10.49□□□□□ -0.73
PRKDCP78527 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
PRKDCP78527 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
PRKDCP78527 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC10.49□□□□□ -0.73
PRKDCP78527 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC10.49□□□□□ -0.73
PRKDCP78527 AL136982.5-201ENST00000605222 294 ntBASIC10.49□□□□□ -0.73
PRKDCP78527 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
PRKDCP78527 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
PRKDCP78527 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
PRKDCP78527 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
PRKDCP78527 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC10.49□□□□□ -0.73
PRKDCP78527 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
PRKDCP78527 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC10.49□□□□□ -0.73
PRKDCP78527 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
PRKDCP78527 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC10.48□□□□□ -0.73
PRKDCP78527 MIR181D-201ENST00000384853 137 ntBASIC10.48□□□□□ -0.73
PRKDCP78527 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC10.48□□□□□ -0.73
PRKDCP78527 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC10.48□□□□□ -0.73
PRKDCP78527 LINC01833-204ENST00000444871 581 ntTSL 3 BASIC10.48□□□□□ -0.73
PRKDCP78527 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC10.48□□□□□ -0.73
PRKDCP78527 BX088702.1-201ENST00000610784 235 ntBASIC10.48□□□□□ -0.73
PRKDCP78527 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
PRKDCP78527 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC10.48□□□□□ -0.73
PRKDCP78527 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC10.48□□□□□ -0.73
PRKDCP78527 CLEC10A-206ENST00000576617 1800 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
PRKDCP78527 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC10.48□□□□□ -0.73
PRKDCP78527 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
PRKDCP78527 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
PRKDCP78527 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC10.48□□□□□ -0.73
PRKDCP78527 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
PRKDCP78527 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC10.48□□□□□ -0.73
PRKDCP78527 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
PRKDCP78527 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
PRKDCP78527 AL008638.4-201ENST00000624792 1315 ntBASIC10.48□□□□□ -0.73
PRKDCP78527 CCL17-201ENST00000219244 615 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
PRKDCP78527 AC026884.1-201ENST00000418296 457 ntBASIC10.48□□□□□ -0.73
PRKDCP78527 TLE1P1-201ENST00000422965 589 ntBASIC10.48□□□□□ -0.73
PRKDCP78527 AC133141.1-201ENST00000443015 339 ntBASIC10.48□□□□□ -0.73
PRKDCP78527 Z69733.1-201ENST00000445990 632 ntTSL 3 BASIC10.48□□□□□ -0.73
Retrieved 100 of 98,524 protein–RNA pairs in 123.9 ms