Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
ABCA4P78363 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
ABCA4P78363 DPM3-202ENST00000368399 517 ntBASIC13.01□□□□□ -0.33
ABCA4P78363 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC13.01□□□□□ -0.33
ABCA4P78363 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC13.01□□□□□ -0.33
ABCA4P78363 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC13.01□□□□□ -0.33
ABCA4P78363 AC234782.1-201ENST00000451950 919 ntBASIC13.01□□□□□ -0.33
ABCA4P78363 AC012618.1-201ENST00000461223 412 ntBASIC13.01□□□□□ -0.33
ABCA4P78363 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC13.01□□□□□ -0.33
ABCA4P78363 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
ABCA4P78363 AC100757.4-201ENST00000626934 759 ntBASIC13.01□□□□□ -0.33
ABCA4P78363 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
ABCA4P78363 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ABCA4P78363 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
ABCA4P78363 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
ABCA4P78363 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ABCA4P78363 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
ABCA4P78363 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC13.01□□□□□ -0.33
ABCA4P78363 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
ABCA4P78363 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC13.01□□□□□ -0.33
ABCA4P78363 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
ABCA4P78363 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
ABCA4P78363 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
ABCA4P78363 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC13□□□□□ -0.33
ABCA4P78363 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC13□□□□□ -0.33
ABCA4P78363 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 AP003419.4-201ENST00000616071 517 ntBASIC13□□□□□ -0.33
ABCA4P78363 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC13□□□□□ -0.33
ABCA4P78363 AL603764.1-201ENST00000636452 321 ntBASIC13□□□□□ -0.33
ABCA4P78363 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC13□□□□□ -0.33
ABCA4P78363 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC13□□□□□ -0.33
ABCA4P78363 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
ABCA4P78363 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC13□□□□□ -0.33
ABCA4P78363 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC13□□□□□ -0.33
ABCA4P78363 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC13□□□□□ -0.33
ABCA4P78363 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC13□□□□□ -0.33
ABCA4P78363 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
ABCA4P78363 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC13□□□□□ -0.33
ABCA4P78363 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC13□□□□□ -0.33
ABCA4P78363 FLJ16779-201ENST00000612722 7638 ntBASIC13□□□□□ -0.33
ABCA4P78363 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 AL008707.1-201ENST00000422498 534 ntBASIC13□□□□□ -0.33
ABCA4P78363 Z97180.1-201ENST00000445173 988 ntBASIC13□□□□□ -0.33
ABCA4P78363 AL353637.1-201ENST00000451571 732 ntBASIC13□□□□□ -0.33
ABCA4P78363 AC104073.2-201ENST00000453737 312 ntBASIC13□□□□□ -0.33
ABCA4P78363 SUPT4H1P2-201ENST00000501248 353 ntBASIC13□□□□□ -0.33
ABCA4P78363 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC13□□□□□ -0.33
ABCA4P78363 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
ABCA4P78363 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
ABCA4P78363 MIR4750-201ENST00000584564 56 ntBASIC13□□□□□ -0.33
ABCA4P78363 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 BNIP3P13-201ENST00000599968 566 ntBASIC13□□□□□ -0.33
ABCA4P78363 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC13□□□□□ -0.33
ABCA4P78363 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ABCA4P78363 TNRC18P3-201ENST00000441896 2691 ntBASIC13□□□□□ -0.33
ABCA4P78363 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
ABCA4P78363 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC12.99□□□□□ -0.33
ABCA4P78363 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC12.99□□□□□ -0.33
ABCA4P78363 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
ABCA4P78363 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 KRT8P21-201ENST00000430398 1491 ntBASIC12.99□□□□□ -0.33
ABCA4P78363 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC12.99□□□□□ -0.33
ABCA4P78363 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC12.99□□□□□ -0.33
ABCA4P78363 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
ABCA4P78363 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
ABCA4P78363 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC12.99□□□□□ -0.33
ABCA4P78363 RBM38-204ENST00000371219 760 ntTSL 2 BASIC12.99□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms