Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RFX3P48380 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC14.3□□□□□ -0.12
RFX3P48380 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC14.3□□□□□ -0.12
RFX3P48380 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RFX3P48380 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
RFX3P48380 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.3□□□□□ -0.12
RFX3P48380 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
RFX3P48380 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC14.3□□□□□ -0.12
RFX3P48380 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RFX3P48380 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
RFX3P48380 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RFX3P48380 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RFX3P48380 SNX18-202ENST00000343017 3140 ntBASIC14.3□□□□□ -0.12
RFX3P48380 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RFX3P48380 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
RFX3P48380 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.3□□□□□ -0.12
RFX3P48380 AC093004.1-201ENST00000508850 424 ntBASIC14.3□□□□□ -0.12
RFX3P48380 AC055876.2-201ENST00000531834 546 ntBASIC14.3□□□□□ -0.12
RFX3P48380 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC14.3□□□□□ -0.12
RFX3P48380 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC14.3□□□□□ -0.12
RFX3P48380 AL049840.4-201ENST00000602422 811 ntBASIC14.3□□□□□ -0.12
RFX3P48380 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14.3□□□□□ -0.12
RFX3P48380 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
RFX3P48380 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.3□□□□□ -0.12
RFX3P48380 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
RFX3P48380 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
RFX3P48380 AC026748.1-201ENST00000624349 3251 ntBASIC14.3□□□□□ -0.12
RFX3P48380 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RFX3P48380 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC14.3□□□□□ -0.12
RFX3P48380 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
RFX3P48380 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
RFX3P48380 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.3□□□□□ -0.12
RFX3P48380 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RFX3P48380 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC14.3□□□□□ -0.12
RFX3P48380 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RFX3P48380 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RFX3P48380 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RFX3P48380 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
RFX3P48380 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RFX3P48380 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RFX3P48380 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.29□□□□□ -0.12
RFX3P48380 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
RFX3P48380 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
RFX3P48380 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
RFX3P48380 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
RFX3P48380 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RFX3P48380 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.29□□□□□ -0.12
RFX3P48380 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RFX3P48380 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.29□□□□□ -0.12
RFX3P48380 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
RFX3P48380 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
RFX3P48380 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RFX3P48380 AC005089.1-201ENST00000619486 2241 ntBASIC14.29□□□□□ -0.12
RFX3P48380 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RFX3P48380 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
RFX3P48380 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RFX3P48380 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
RFX3P48380 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RFX3P48380 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RFX3P48380 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RFX3P48380 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
RFX3P48380 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.29□□□□□ -0.12
RFX3P48380 MEP1AP4-201ENST00000423244 1087 ntBASIC14.29□□□□□ -0.12
RFX3P48380 HMGN1P19-201ENST00000436976 333 ntBASIC14.29□□□□□ -0.12
RFX3P48380 AC002472.2-201ENST00000442739 958 ntBASIC14.29□□□□□ -0.12
RFX3P48380 SPTLC1P1-201ENST00000447199 261 ntBASIC14.29□□□□□ -0.12
RFX3P48380 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RFX3P48380 VDAC1P7-201ENST00000462417 847 ntBASIC14.29□□□□□ -0.12
RFX3P48380 RN7SL399P-201ENST00000471648 279 ntBASIC14.29□□□□□ -0.12
RFX3P48380 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC14.29□□□□□ -0.12
RFX3P48380 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.29□□□□□ -0.12
RFX3P48380 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC14.29□□□□□ -0.12
RFX3P48380 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC14.29□□□□□ -0.12
RFX3P48380 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
RFX3P48380 RN7SL204P-201ENST00000582831 262 ntBASIC14.29□□□□□ -0.12
RFX3P48380 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
RFX3P48380 AC008761.3-201ENST00000624803 892 ntBASIC14.29□□□□□ -0.12
RFX3P48380 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RFX3P48380 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
RFX3P48380 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RFX3P48380 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RFX3P48380 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RFX3P48380 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RFX3P48380 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RFX3P48380 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.29□□□□□ -0.12
RFX3P48380 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
RFX3P48380 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
RFX3P48380 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RFX3P48380 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RFX3P48380 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RFX3P48380 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
RFX3P48380 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RFX3P48380 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.29□□□□□ -0.12
RFX3P48380 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
RFX3P48380 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
RFX3P48380 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
RFX3P48380 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RFX3P48380 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFX3P48380 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFX3P48380 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms