Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HTTP42858 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC16.44■□□□□ 0.22
HTTP42858 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC16.44■□□□□ 0.22
HTTP42858 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.44■□□□□ 0.22
HTTP42858 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
HTTP42858 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HTTP42858 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HTTP42858 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HTTP42858 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
HTTP42858 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HTTP42858 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HTTP42858 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC16.44■□□□□ 0.22
HTTP42858 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC16.44■□□□□ 0.22
HTTP42858 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC16.44■□□□□ 0.22
HTTP42858 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC16.44■□□□□ 0.22
HTTP42858 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
HTTP42858 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.44■□□□□ 0.22
HTTP42858 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC16.44■□□□□ 0.22
HTTP42858 IGHEP2-201ENST00000519308 1256 ntBASIC16.44■□□□□ 0.22
HTTP42858 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC16.44■□□□□ 0.22
HTTP42858 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC16.44■□□□□ 0.22
HTTP42858 AC142086.5-202ENST00000562500 217 ntBASIC16.44■□□□□ 0.22
HTTP42858 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HTTP42858 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC16.44■□□□□ 0.22
HTTP42858 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC16.44■□□□□ 0.22
HTTP42858 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC16.44■□□□□ 0.22
HTTP42858 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.44■□□□□ 0.22
HTTP42858 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16.44■□□□□ 0.22
HTTP42858 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
HTTP42858 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC16.43■□□□□ 0.22
HTTP42858 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC16.43■□□□□ 0.22
HTTP42858 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC16.43■□□□□ 0.22
HTTP42858 OR8T1P-201ENST00000421347 918 ntBASIC16.43■□□□□ 0.22
HTTP42858 ERP29P1-201ENST00000442902 706 ntBASIC16.43■□□□□ 0.22
HTTP42858 GNG10P1-201ENST00000452289 199 ntBASIC16.43■□□□□ 0.22
HTTP42858 KRT18P37-201ENST00000520711 1282 ntBASIC16.43■□□□□ 0.22
HTTP42858 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC16.43■□□□□ 0.22
HTTP42858 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
HTTP42858 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HTTP42858 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HTTP42858 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HTTP42858 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
HTTP42858 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.43■□□□□ 0.22
HTTP42858 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC16.43■□□□□ 0.22
HTTP42858 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC16.43■□□□□ 0.22
HTTP42858 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HTTP42858 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HTTP42858 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HTTP42858 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.43■□□□□ 0.22
HTTP42858 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
HTTP42858 RPL14-203ENST00000416518 812 ntTSL 3 BASIC16.43■□□□□ 0.22
HTTP42858 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC16.43■□□□□ 0.22
HTTP42858 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HTTP42858 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC16.43■□□□□ 0.22
HTTP42858 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC16.43■□□□□ 0.22
HTTP42858 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC16.43■□□□□ 0.22
HTTP42858 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
HTTP42858 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HTTP42858 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HTTP42858 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HTTP42858 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.43■□□□□ 0.22
HTTP42858 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HTTP42858 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
HTTP42858 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HTTP42858 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
HTTP42858 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.43■□□□□ 0.22
HTTP42858 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HTTP42858 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
HTTP42858 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
HTTP42858 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
HTTP42858 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC16.43■□□□□ 0.22
HTTP42858 RN7SL846P-201ENST00000467429 292 ntBASIC16.43■□□□□ 0.22
HTTP42858 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC16.43■□□□□ 0.22
HTTP42858 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC16.43■□□□□ 0.22
HTTP42858 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC16.43■□□□□ 0.22
HTTP42858 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HTTP42858 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
HTTP42858 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
HTTP42858 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.42■□□□□ 0.22
HTTP42858 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HTTP42858 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HTTP42858 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC16.42■□□□□ 0.22
HTTP42858 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC16.42■□□□□ 0.22
HTTP42858 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HTTP42858 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC16.42■□□□□ 0.22
HTTP42858 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HTTP42858 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HTTP42858 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC16.42■□□□□ 0.22
HTTP42858 AP003900.1-201ENST00000622592 859 ntTSL 3 BASIC16.42■□□□□ 0.22
HTTP42858 AP000769.1-203ENST00000637245 208 ntBASIC16.42■□□□□ 0.22
HTTP42858 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HTTP42858 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.42■□□□□ 0.22
HTTP42858 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
HTTP42858 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HTTP42858 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HTTP42858 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC16.42■□□□□ 0.22
HTTP42858 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HTTP42858 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC16.42■□□□□ 0.22
HTTP42858 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
HTTP42858 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms