Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
BDNFP23560 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC15.92■□□□□ 0.14
BDNFP23560 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC15.92■□□□□ 0.14
BDNFP23560 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
BDNFP23560 ACR-203ENST00000529621 708 ntTSL 5 BASIC15.92■□□□□ 0.14
BDNFP23560 USB1-203ENST00000539737 1212 ntTSL 2 BASIC15.92■□□□□ 0.14
BDNFP23560 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC15.92■□□□□ 0.14
BDNFP23560 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC15.92■□□□□ 0.14
BDNFP23560 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC15.92■□□□□ 0.14
BDNFP23560 RN7SL713P-201ENST00000582127 302 ntBASIC15.92■□□□□ 0.14
BDNFP23560 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
BDNFP23560 AC073413.1-201ENST00000603927 732 ntBASIC15.92■□□□□ 0.14
BDNFP23560 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
BDNFP23560 PCDHGB8P-201ENST00000502926 1973 ntBASIC15.92■□□□□ 0.14
BDNFP23560 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
BDNFP23560 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
BDNFP23560 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
BDNFP23560 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
BDNFP23560 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
BDNFP23560 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC15.92■□□□□ 0.14
BDNFP23560 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.92■□□□□ 0.14
BDNFP23560 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.92■□□□□ 0.14
BDNFP23560 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.92■□□□□ 0.14
BDNFP23560 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
BDNFP23560 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
BDNFP23560 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
BDNFP23560 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
BDNFP23560 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
BDNFP23560 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
BDNFP23560 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.91■□□□□ 0.14
BDNFP23560 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
BDNFP23560 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC15.91■□□□□ 0.14
BDNFP23560 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
BDNFP23560 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.91■□□□□ 0.14
BDNFP23560 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.91■□□□□ 0.14
BDNFP23560 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
BDNFP23560 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
BDNFP23560 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
BDNFP23560 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
BDNFP23560 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
BDNFP23560 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
BDNFP23560 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
BDNFP23560 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC15.91■□□□□ 0.14
BDNFP23560 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
BDNFP23560 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
BDNFP23560 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
BDNFP23560 MIR326-201ENST00000362220 95 ntBASIC15.91■□□□□ 0.14
BDNFP23560 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
BDNFP23560 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC15.91■□□□□ 0.14
BDNFP23560 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC15.91■□□□□ 0.14
BDNFP23560 PPY2P-201ENST00000582808 702 ntBASIC15.91■□□□□ 0.14
BDNFP23560 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
BDNFP23560 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC15.91■□□□□ 0.14
BDNFP23560 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC15.91■□□□□ 0.14
BDNFP23560 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
BDNFP23560 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC15.91■□□□□ 0.14
BDNFP23560 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.91■□□□□ 0.14
BDNFP23560 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
BDNFP23560 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
BDNFP23560 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
BDNFP23560 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC15.91■□□□□ 0.14
BDNFP23560 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.91■□□□□ 0.14
BDNFP23560 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
BDNFP23560 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
BDNFP23560 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
BDNFP23560 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
BDNFP23560 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
BDNFP23560 INE2-201ENST00000630399 1874 ntBASIC15.91■□□□□ 0.14
BDNFP23560 KRT8P4-201ENST00000509735 1454 ntBASIC15.91■□□□□ 0.14
BDNFP23560 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
BDNFP23560 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
BDNFP23560 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
BDNFP23560 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.9■□□□□ 0.14
BDNFP23560 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
BDNFP23560 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
BDNFP23560 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
BDNFP23560 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
BDNFP23560 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
BDNFP23560 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
BDNFP23560 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
BDNFP23560 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC15.9■□□□□ 0.14
BDNFP23560 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
BDNFP23560 GOLGA2P4-201ENST00000441462 777 ntBASIC15.9■□□□□ 0.14
BDNFP23560 Z93015.1-201ENST00000451718 390 ntBASIC15.9■□□□□ 0.14
BDNFP23560 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
BDNFP23560 FAM86HP-204ENST00000513466 959 ntBASIC15.9■□□□□ 0.14
BDNFP23560 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
BDNFP23560 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
BDNFP23560 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
BDNFP23560 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
BDNFP23560 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC15.9■□□□□ 0.14
BDNFP23560 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC15.9■□□□□ 0.14
BDNFP23560 AC023090.2-201ENST00000625182 2110 ntBASIC15.9■□□□□ 0.14
BDNFP23560 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC15.9■□□□□ 0.14
BDNFP23560 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC15.9■□□□□ 0.14
BDNFP23560 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
BDNFP23560 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
BDNFP23560 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC15.9■□□□□ 0.14
BDNFP23560 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
BDNFP23560 AC023824.1-201ENST00000562945 2975 ntBASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms