Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX1P22670 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC16.51■□□□□ 0.23
RFX1P22670 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
RFX1P22670 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC16.51■□□□□ 0.23
RFX1P22670 LILRP1-201ENST00000444199 1370 ntBASIC16.51■□□□□ 0.23
RFX1P22670 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX1P22670 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX1P22670 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX1P22670 TUBB1P2-201ENST00000422712 1306 ntBASIC16.5■□□□□ 0.23
RFX1P22670 TUBB1P1-201ENST00000503144 1300 ntBASIC16.5■□□□□ 0.23
RFX1P22670 AC093525.8-201ENST00000624099 1342 ntBASIC16.5■□□□□ 0.23
RFX1P22670 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX1P22670 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX1P22670 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RFX1P22670 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX1P22670 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX1P22670 PCDHA3-202ENST00000532566 4594 ntBASIC16.5■□□□□ 0.23
RFX1P22670 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
RFX1P22670 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX1P22670 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX1P22670 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.5■□□□□ 0.23
RFX1P22670 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX1P22670 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC16.5■□□□□ 0.23
RFX1P22670 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC16.5■□□□□ 0.23
RFX1P22670 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC16.5■□□□□ 0.23
RFX1P22670 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC16.5■□□□□ 0.23
RFX1P22670 AC026410.3-201ENST00000514280 936 ntBASIC16.5■□□□□ 0.23
RFX1P22670 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RFX1P22670 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
RFX1P22670 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.5■□□□□ 0.23
RFX1P22670 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX1P22670 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC16.5■□□□□ 0.23
RFX1P22670 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX1P22670 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RFX1P22670 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC16.5■□□□□ 0.23
RFX1P22670 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
RFX1P22670 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX1P22670 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RFX1P22670 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC16.5■□□□□ 0.23
RFX1P22670 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC16.5■□□□□ 0.23
RFX1P22670 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RFX1P22670 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RFX1P22670 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX1P22670 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX1P22670 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX1P22670 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC16.49■□□□□ 0.23
RFX1P22670 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
RFX1P22670 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX1P22670 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RFX1P22670 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RFX1P22670 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RFX1P22670 AC232323.1-201ENST00000540724 2099 ntBASIC16.49■□□□□ 0.23
RFX1P22670 REXO1L5P-201ENST00000622260 2098 ntBASIC16.49■□□□□ 0.23
RFX1P22670 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RFX1P22670 LINC02228-204ENST00000642115 2962 ntBASIC16.49■□□□□ 0.23
RFX1P22670 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX1P22670 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
RFX1P22670 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX1P22670 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RFX1P22670 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RFX1P22670 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
RFX1P22670 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX1P22670 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC16.49■□□□□ 0.23
RFX1P22670 DRD5P1-201ENST00000456605 1438 ntBASIC16.49■□□□□ 0.23
RFX1P22670 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX1P22670 FAM86LP-201ENST00000478302 853 ntBASIC16.49■□□□□ 0.23
RFX1P22670 USP32P1-208ENST00000506594 1164 ntBASIC16.49■□□□□ 0.23
RFX1P22670 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC16.49■□□□□ 0.23
RFX1P22670 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
RFX1P22670 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC16.49■□□□□ 0.23
RFX1P22670 AC132872.1-201ENST00000566986 1195 ntBASIC16.49■□□□□ 0.23
RFX1P22670 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC16.49■□□□□ 0.23
RFX1P22670 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.49■□□□□ 0.23
RFX1P22670 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC16.49■□□□□ 0.23
RFX1P22670 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
RFX1P22670 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RFX1P22670 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC16.49■□□□□ 0.23
RFX1P22670 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
RFX1P22670 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
RFX1P22670 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX1P22670 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX1P22670 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX1P22670 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX1P22670 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX1P22670 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC16.49■□□□□ 0.23
RFX1P22670 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RFX1P22670 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.49■□□□□ 0.23
RFX1P22670 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX1P22670 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
RFX1P22670 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RFX1P22670 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
RFX1P22670 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RFX1P22670 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC16.48■□□□□ 0.23
RFX1P22670 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC16.48■□□□□ 0.23
RFX1P22670 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RFX1P22670 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RFX1P22670 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RFX1P22670 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC16.48■□□□□ 0.23
RFX1P22670 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RFX1P22670 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms