Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.42□□□□□ -0.1
SDC1P18827 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SDC1P18827 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.41□□□□□ -0.1
SDC1P18827 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
SDC1P18827 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.41□□□□□ -0.1
SDC1P18827 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
SDC1P18827 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC14.41□□□□□ -0.1
SDC1P18827 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
SDC1P18827 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC14.41□□□□□ -0.1
SDC1P18827 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC14.41□□□□□ -0.1
SDC1P18827 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC14.41□□□□□ -0.1
SDC1P18827 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 TEX30-203ENST00000376022 828 ntTSL 2 BASIC14.41□□□□□ -0.1
SDC1P18827 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.41□□□□□ -0.1
SDC1P18827 NUS1P3-201ENST00000423502 862 ntBASIC14.41□□□□□ -0.1
SDC1P18827 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC14.41□□□□□ -0.1
SDC1P18827 TPT1P11-201ENST00000458482 498 ntBASIC14.41□□□□□ -0.1
SDC1P18827 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC14.41□□□□□ -0.1
SDC1P18827 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 DUT-210ENST00000559935 569 ntTSL 3 BASIC14.41□□□□□ -0.1
SDC1P18827 SPDYE22P-201ENST00000582158 798 ntBASIC14.41□□□□□ -0.1
SDC1P18827 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.41□□□□□ -0.1
SDC1P18827 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC14.41□□□□□ -0.1
SDC1P18827 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.41□□□□□ -0.1
SDC1P18827 MIR8072-201ENST00000614241 80 ntBASIC14.41□□□□□ -0.1
SDC1P18827 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.41□□□□□ -0.1
SDC1P18827 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
SDC1P18827 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.41□□□□□ -0.1
SDC1P18827 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.41□□□□□ -0.1
SDC1P18827 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.41□□□□□ -0.1
SDC1P18827 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDC1P18827 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
SDC1P18827 KRT8P14-201ENST00000414254 1442 ntBASIC14.41□□□□□ -0.1
SDC1P18827 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
SDC1P18827 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC14.4□□□□□ -0.1
SDC1P18827 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDC1P18827 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SDC1P18827 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDC1P18827 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SDC1P18827 OR2I1P-209ENST00000641730 5365 ntBASIC14.4□□□□□ -0.1
SDC1P18827 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDC1P18827 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.4□□□□□ -0.1
SDC1P18827 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDC1P18827 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
SDC1P18827 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.4□□□□□ -0.1
SDC1P18827 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.4□□□□□ -0.1
SDC1P18827 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDC1P18827 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC14.4□□□□□ -0.1
SDC1P18827 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDC1P18827 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDC1P18827 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
SDC1P18827 AC055811.4-201ENST00000624039 1754 ntBASIC14.4□□□□□ -0.1
SDC1P18827 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
SDC1P18827 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
SDC1P18827 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.4□□□□□ -0.1
SDC1P18827 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.4□□□□□ -0.1
SDC1P18827 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
SDC1P18827 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDC1P18827 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SDC1P18827 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDC1P18827 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
SDC1P18827 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
SDC1P18827 METTL26-204ENST00000397665 558 ntTSL 2 BASIC14.4□□□□□ -0.1
SDC1P18827 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.4□□□□□ -0.1
SDC1P18827 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.4□□□□□ -0.1
SDC1P18827 AL139094.1-201ENST00000405549 1188 ntBASIC14.4□□□□□ -0.1
SDC1P18827 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC14.4□□□□□ -0.1
SDC1P18827 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.4□□□□□ -0.1
SDC1P18827 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC14.4□□□□□ -0.1
SDC1P18827 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC14.4□□□□□ -0.1
SDC1P18827 CD81-207ENST00000481687 890 ntTSL 2 BASIC14.4□□□□□ -0.1
SDC1P18827 AC093004.1-201ENST00000508850 424 ntBASIC14.4□□□□□ -0.1
SDC1P18827 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.4□□□□□ -0.1
SDC1P18827 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC14.4□□□□□ -0.1
SDC1P18827 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms