Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD4P09016 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD4P09016 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC13.8□□□□□ -0.2
HOXD4P09016 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD4P09016 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD4P09016 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD4P09016 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD4P09016 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
HOXD4P09016 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
HOXD4P09016 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD4P09016 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD4P09016 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD4P09016 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC13.8□□□□□ -0.2
HOXD4P09016 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC13.8□□□□□ -0.2
HOXD4P09016 CD8B2-202ENST00000417670 633 ntBASIC13.8□□□□□ -0.2
HOXD4P09016 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC13.8□□□□□ -0.2
HOXD4P09016 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD4P09016 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD4P09016 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC13.8□□□□□ -0.2
HOXD4P09016 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD4P09016 AHRR-211ENST00000515206 462 ntTSL 5 BASIC13.8□□□□□ -0.2
HOXD4P09016 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC13.8□□□□□ -0.2
HOXD4P09016 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC13.8□□□□□ -0.2
HOXD4P09016 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC13.8□□□□□ -0.2
HOXD4P09016 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC13.8□□□□□ -0.2
HOXD4P09016 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD4P09016 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC13.8□□□□□ -0.2
HOXD4P09016 AC244093.1-201ENST00000610837 814 ntBASIC13.8□□□□□ -0.2
HOXD4P09016 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC13.8□□□□□ -0.2
HOXD4P09016 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC13.8□□□□□ -0.2
HOXD4P09016 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
HOXD4P09016 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD4P09016 AC063926.3-201ENST00000624734 5658 ntBASIC13.8□□□□□ -0.2
HOXD4P09016 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
HOXD4P09016 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC13.8□□□□□ -0.2
HOXD4P09016 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC13.8□□□□□ -0.2
HOXD4P09016 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD4P09016 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC13.8□□□□□ -0.2
HOXD4P09016 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
HOXD4P09016 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC13.8□□□□□ -0.2
HOXD4P09016 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD4P09016 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD4P09016 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD4P09016 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC13.8□□□□□ -0.2
HOXD4P09016 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD4P09016 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD4P09016 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC13.8□□□□□ -0.2
HOXD4P09016 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD4P09016 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD4P09016 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD4P09016 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC13.79□□□□□ -0.2
HOXD4P09016 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC13.79□□□□□ -0.2
HOXD4P09016 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC13.79□□□□□ -0.2
HOXD4P09016 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
HOXD4P09016 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC13.79□□□□□ -0.2
HOXD4P09016 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC13.79□□□□□ -0.2
HOXD4P09016 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 B9D1-203ENST00000395615 805 ntTSL 3 BASIC13.79□□□□□ -0.2
HOXD4P09016 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 AC106760.1-201ENST00000508690 800 ntBASIC13.79□□□□□ -0.2
HOXD4P09016 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
HOXD4P09016 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
HOXD4P09016 AC010328.2-201ENST00000597698 1111 ntBASIC13.79□□□□□ -0.2
HOXD4P09016 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 KRT8P35-201ENST00000483942 1338 ntBASIC13.79□□□□□ -0.2
HOXD4P09016 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 LCK-206ENST00000373564 2137 ntTSL 5 BASIC13.79□□□□□ -0.2
HOXD4P09016 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC13.79□□□□□ -0.2
HOXD4P09016 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC13.79□□□□□ -0.2
HOXD4P09016 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC13.79□□□□□ -0.2
HOXD4P09016 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC13.79□□□□□ -0.2
HOXD4P09016 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD4P09016 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC13.79□□□□□ -0.2
HOXD4P09016 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD4P09016 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC13.78□□□□□ -0.2
HOXD4P09016 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
HOXD4P09016 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HOXD4P09016 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC13.78□□□□□ -0.2
HOXD4P09016 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms