Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CUX2O14529 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CUX2O14529 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC25.11■■□□□ 1.61
CUX2O14529 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC25.11■■□□□ 1.61
CUX2O14529 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
CUX2O14529 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC25.11■■□□□ 1.61
CUX2O14529 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC25.1■■□□□ 1.61
CUX2O14529 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CUX2O14529 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CUX2O14529 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC25.1■■□□□ 1.61
CUX2O14529 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC25.1■■□□□ 1.61
CUX2O14529 AHCYP4-201ENST00000419201 1315 ntBASIC25.1■■□□□ 1.61
CUX2O14529 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.61
CUX2O14529 DBNDD2-207ENST00000372722 1202 ntTSL 3 BASIC25.1■■□□□ 1.61
CUX2O14529 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CUX2O14529 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC25.1■■□□□ 1.61
CUX2O14529 TOMM5-203ENST00000401811 789 ntTSL 2 BASIC25.1■■□□□ 1.61
CUX2O14529 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC25.1■■□□□ 1.61
CUX2O14529 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CUX2O14529 RNA5SP406-201ENST00000516106 112 ntBASIC25.1■■□□□ 1.61
CUX2O14529 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
CUX2O14529 BIRC5-211ENST00000592734 386 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CUX2O14529 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC25.1■■□□□ 1.61
CUX2O14529 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC25.1■■□□□ 1.61
CUX2O14529 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC25.1■■□□□ 1.61
CUX2O14529 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CUX2O14529 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC25.1■■□□□ 1.61
CUX2O14529 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CUX2O14529 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CUX2O14529 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC25.09■■□□□ 1.61
CUX2O14529 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
CUX2O14529 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CUX2O14529 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CUX2O14529 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CUX2O14529 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC25.09■■□□□ 1.61
CUX2O14529 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CUX2O14529 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CUX2O14529 RPL5P21-201ENST00000404620 815 ntBASIC25.09■■□□□ 1.61
CUX2O14529 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC25.09■■□□□ 1.61
CUX2O14529 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CUX2O14529 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC25.09■■□□□ 1.61
CUX2O14529 AC008026.2-201ENST00000495438 348 ntBASIC25.09■■□□□ 1.61
CUX2O14529 SEPHS2P1-201ENST00000511618 1162 ntBASIC25.09■■□□□ 1.61
CUX2O14529 AC011431.1-201ENST00000512971 230 ntBASIC25.09■■□□□ 1.61
CUX2O14529 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CUX2O14529 MYL6-215ENST00000549566 685 ntTSL 2 BASIC25.09■■□□□ 1.61
CUX2O14529 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC25.09■■□□□ 1.61
CUX2O14529 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC25.09■■□□□ 1.61
CUX2O14529 OR3A1-202ENST00000615105 966 ntBASIC25.09■■□□□ 1.61
CUX2O14529 HELLS-212ENST00000630929 400 ntTSL 5 BASIC25.09■■□□□ 1.61
CUX2O14529 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC25.09■■□□□ 1.61
CUX2O14529 ZNF143-202ENST00000396597 1954 ntTSL 2 BASIC25.09■■□□□ 1.61
CUX2O14529 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC25.09■■□□□ 1.61
CUX2O14529 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC25.09■■□□□ 1.61
CUX2O14529 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CUX2O14529 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC25.09■■□□□ 1.61
CUX2O14529 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC25.09■■□□□ 1.61
CUX2O14529 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC25.09■■□□□ 1.61
CUX2O14529 PGAM1P11-201ENST00000416729 680 ntBASIC25.09■■□□□ 1.61
CUX2O14529 AL512599.1-201ENST00000430724 685 ntBASIC25.09■■□□□ 1.61
CUX2O14529 CDCA4P4-201ENST00000435216 680 ntBASIC25.09■■□□□ 1.61
CUX2O14529 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CUX2O14529 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC25.09■■□□□ 1.61
CUX2O14529 RPL18AP8-201ENST00000486071 528 ntBASIC25.09■■□□□ 1.61
CUX2O14529 SIGLEC22P-201ENST00000599104 714 ntBASIC25.09■■□□□ 1.61
CUX2O14529 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
CUX2O14529 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
CUX2O14529 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
CUX2O14529 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CUX2O14529 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC25.08■■□□□ 1.61
CUX2O14529 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC25.08■■□□□ 1.61
CUX2O14529 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC25.08■■□□□ 1.61
CUX2O14529 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CUX2O14529 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CUX2O14529 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CUX2O14529 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
CUX2O14529 IL1F10-201ENST00000341010 1013 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
CUX2O14529 OR2R1P-201ENST00000441404 914 ntBASIC25.08■■□□□ 1.6
CUX2O14529 RN7SL147P-201ENST00000487345 298 ntBASIC25.08■■□□□ 1.6
CUX2O14529 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC25.08■■□□□ 1.6
CUX2O14529 AP000920.1-201ENST00000531824 344 ntBASIC25.08■■□□□ 1.6
CUX2O14529 LINC00244-201ENST00000625073 613 ntBASIC25.08■■□□□ 1.6
CUX2O14529 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.6
CUX2O14529 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC25.08■■□□□ 1.6
CUX2O14529 API5-208ENST00000531273 1868 ntTSL 2 BASIC25.08■■□□□ 1.6
CUX2O14529 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
CUX2O14529 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC25.07■■□□□ 1.6
CUX2O14529 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
CUX2O14529 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CUX2O14529 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
CUX2O14529 AL603832.2-201ENST00000566195 2125 ntBASIC25.07■■□□□ 1.6
CUX2O14529 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
CUX2O14529 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
CUX2O14529 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
CUX2O14529 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC25.07■■□□□ 1.6
CUX2O14529 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
CUX2O14529 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC25.07■■□□□ 1.6
CUX2O14529 SLC35F2-201ENST00000375682 1076 ntAPPRIS ALT2 TSL 5 BASIC25.07■■□□□ 1.6
CUX2O14529 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC25.07■■□□□ 1.6
CUX2O14529 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC25.07■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms