Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CUEDC1Q9NWM3 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CUEDC1Q9NWM3 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CUEDC1Q9NWM3 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CUEDC1Q9NWM3 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
CUEDC1Q9NWM3 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.71□□□□□ -0.06
CUEDC1Q9NWM3 REXO1L6P-201ENST00000603433 1515 ntBASIC14.71□□□□□ -0.06
CUEDC1Q9NWM3 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CUEDC1Q9NWM3 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC14.71□□□□□ -0.06
CUEDC1Q9NWM3 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CUEDC1Q9NWM3 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
CUEDC1Q9NWM3 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CUEDC1Q9NWM3 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CUEDC1Q9NWM3 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 POR-201ENST00000394893 2532 ntTSL 5 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 TDH-203ENST00000531764 1110 ntBASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 ACE3P-201ENST00000423435 1973 ntBASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
CUEDC1Q9NWM3 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 KLF2P2-201ENST00000416807 1039 ntBASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC14.69□□□□□ -0.06
CUEDC1Q9NWM3 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms