Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC15.08■□□□□ 0
TRIM39Q9HCM9 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC15.08■□□□□ 0
TRIM39Q9HCM9 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC15.08■□□□□ 0
TRIM39Q9HCM9 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC15.08■□□□□ 0
TRIM39Q9HCM9 AL512343.1-201ENST00000605837 169 ntBASIC15.08■□□□□ 0
TRIM39Q9HCM9 AC145423.3-201ENST00000615987 467 ntBASIC15.08■□□□□ 0
TRIM39Q9HCM9 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.08■□□□□ 0
TRIM39Q9HCM9 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM39Q9HCM9 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM39Q9HCM9 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM39Q9HCM9 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM39Q9HCM9 WASH3P-207ENST00000560956 1394 ntBASIC15.08■□□□□ 0
TRIM39Q9HCM9 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC15.08■□□□□ 0
TRIM39Q9HCM9 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC15.08■□□□□ 0
TRIM39Q9HCM9 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC15.08■□□□□ 0
TRIM39Q9HCM9 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM39Q9HCM9 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC15.08■□□□□ 0
TRIM39Q9HCM9 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC15.08■□□□□ 0
TRIM39Q9HCM9 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.08■□□□□ 0
TRIM39Q9HCM9 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM39Q9HCM9 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM39Q9HCM9 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC15.08■□□□□ 0
TRIM39Q9HCM9 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM39Q9HCM9 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
TRIM39Q9HCM9 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
TRIM39Q9HCM9 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM39Q9HCM9 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRIM39Q9HCM9 AC138035.3-201ENST00000622706 2791 ntBASIC15.07■□□□□ 0
TRIM39Q9HCM9 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRIM39Q9HCM9 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRIM39Q9HCM9 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRIM39Q9HCM9 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
TRIM39Q9HCM9 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRIM39Q9HCM9 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRIM39Q9HCM9 AL109954.1-202ENST00000564051 2148 ntBASIC15.07■□□□□ 0
TRIM39Q9HCM9 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC15.07■□□□□ 0
TRIM39Q9HCM9 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRIM39Q9HCM9 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC15.07■□□□□ 0
TRIM39Q9HCM9 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 AC016694.1-201ENST00000434179 700 ntBASIC15.07■□□□□ 0
TRIM39Q9HCM9 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 AC234783.1-201ENST00000441761 496 ntBASIC15.07■□□□□ 0
TRIM39Q9HCM9 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 AC007551.1-201ENST00000457394 519 ntBASIC15.07■□□□□ 0
TRIM39Q9HCM9 ACA64.2-201ENST00000459014 129 ntBASIC15.07■□□□□ 0
TRIM39Q9HCM9 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 SERF2-217ENST00000630046 862 ntTSL 5 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 AL603764.1-201ENST00000636452 321 ntBASIC15.07■□□□□ 0
TRIM39Q9HCM9 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRIM39Q9HCM9 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRIM39Q9HCM9 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRIM39Q9HCM9 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRIM39Q9HCM9 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
TRIM39Q9HCM9 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRIM39Q9HCM9 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRIM39Q9HCM9 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC15.07■□□□□ 0
TRIM39Q9HCM9 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
TRIM39Q9HCM9 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
TRIM39Q9HCM9 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
TRIM39Q9HCM9 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRIM39Q9HCM9 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC15.07■□□□□ 0
TRIM39Q9HCM9 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRIM39Q9HCM9 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC15.06■□□□□ 0
TRIM39Q9HCM9 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
TRIM39Q9HCM9 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRIM39Q9HCM9 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
TRIM39Q9HCM9 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC15.06■□□□□ 0
TRIM39Q9HCM9 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRIM39Q9HCM9 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.06■□□□□ 0
TRIM39Q9HCM9 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.06■□□□□ 0
TRIM39Q9HCM9 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRIM39Q9HCM9 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
TRIM39Q9HCM9 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
TRIM39Q9HCM9 REXO1L5P-201ENST00000622260 2098 ntBASIC15.06■□□□□ 0
TRIM39Q9HCM9 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRIM39Q9HCM9 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TRIM39Q9HCM9 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms