Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 HSPA7-201ENST00000445535 1927 ntBASIC15.66■□□□□ 0.1
PCDH9Q9HC56 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
PCDH9Q9HC56 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 FES-203ENST00000394302 2133 ntTSL 5 BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 TKT-201ENST00000296289 1931 ntTSL 5 BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 OS9-204ENST00000389146 2091 ntTSL 2 BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 AC123567.1-201ENST00000548294 1261 ntBASIC15.65■□□□□ 0.1
PCDH9Q9HC56 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 AC138761.1-201ENST00000584393 385 ntBASIC15.65■□□□□ 0.1
PCDH9Q9HC56 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC15.65■□□□□ 0.1
PCDH9Q9HC56 MIR8072-201ENST00000614241 80 ntBASIC15.65■□□□□ 0.1
PCDH9Q9HC56 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 AL157414.3-201ENST00000624276 1954 ntBASIC15.65■□□□□ 0.1
PCDH9Q9HC56 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
PCDH9Q9HC56 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
PCDH9Q9HC56 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC15.64■□□□□ 0.1
PCDH9Q9HC56 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 AC015802.1-201ENST00000588104 1449 ntBASIC15.64■□□□□ 0.09
PCDH9Q9HC56 AL049840.4-201ENST00000602422 811 ntBASIC15.64■□□□□ 0.09
PCDH9Q9HC56 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 AC007431.3-201ENST00000623221 587 ntBASIC15.64■□□□□ 0.09
PCDH9Q9HC56 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
PCDH9Q9HC56 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms