Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 AC073413.1-201ENST00000603927 732 ntBASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 AC007274.1-201ENST00000439805 662 ntBASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 CHMP1AP1-201ENST00000445563 662 ntBASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 ATP6V0CP2-201ENST00000469409 207 ntBASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 VPS18-202ENST00000558474 873 ntTSL 3 BASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 AC004466.1-201ENST00000599515 1080 ntBASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 BX088702.1-201ENST00000610784 235 ntBASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 MIR6799-201ENST00000620297 69 ntBASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4AQ9BY43 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4AQ9BY43 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4AQ9BY43 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
CHMP4AQ9BY43 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4AQ9BY43 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4AQ9BY43 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4AQ9BY43 AC023157.3-201ENST00000619086 2088 ntBASIC19.22■□□□□ 0.67
CHMP4AQ9BY43 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4AQ9BY43 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4AQ9BY43 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CHMP4AQ9BY43 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CHMP4AQ9BY43 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4AQ9BY43 APOA2-204ENST00000464492 530 ntTSL 3 BASIC19.22■□□□□ 0.67
CHMP4AQ9BY43 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CHMP4AQ9BY43 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CHMP4AQ9BY43 HNRNPA1P48-202ENST00000565308 961 ntBASIC19.22■□□□□ 0.67
CHMP4AQ9BY43 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC19.22■□□□□ 0.67
CHMP4AQ9BY43 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC19.22■□□□□ 0.67
CHMP4AQ9BY43 CYGB-203ENST00000589145 788 ntTSL 3 BASIC19.22■□□□□ 0.67
CHMP4AQ9BY43 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4AQ9BY43 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4AQ9BY43 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC19.22■□□□□ 0.67
CHMP4AQ9BY43 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CHMP4AQ9BY43 AC003102.2-201ENST00000589195 1469 ntBASIC19.22■□□□□ 0.67
CHMP4AQ9BY43 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4AQ9BY43 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
CHMP4AQ9BY43 FAM58BP-201ENST00000439056 645 ntBASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms