Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC105206.1-202ENST00000314927 2368 ntBASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 AL121723.1-201ENST00000445194 1519 ntBASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 AL360270.3-201ENST00000609118 1348 ntBASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 TOMM22P5-201ENST00000416399 439 ntBASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 MKNK2P1-201ENST00000437526 628 ntBASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 RPL13P2-201ENST00000440687 659 ntBASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 AC025048.3-201ENST00000590609 569 ntBASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 AC005702.4-201ENST00000618393 416 ntBASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 C20orf181-201ENST00000623918 480 ntBASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
CCDC28BQ9BUN5 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC28BQ9BUN5 DLG4-203ENST00000399510 3975 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC28BQ9BUN5 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.77□□□□□ -0.04
CCDC28BQ9BUN5 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC28BQ9BUN5 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC28BQ9BUN5 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC28BQ9BUN5 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC28BQ9BUN5 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC28BQ9BUN5 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC14.77□□□□□ -0.04
CCDC28BQ9BUN5 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC14.77□□□□□ -0.04
CCDC28BQ9BUN5 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC28BQ9BUN5 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC14.77□□□□□ -0.04
CCDC28BQ9BUN5 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 AL079307.3-201ENST00000556114 283 ntBASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 MVK-214ENST00000629016 1591 ntTSL 5 BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC28BQ9BUN5 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC28BQ9BUN5 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms