Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC15.08■□□□□ 0
ECHDC3Q96DC8 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
ECHDC3Q96DC8 RGS5-214ENST00000429865 754 ntTSL 3 BASIC15.08■□□□□ 0
ECHDC3Q96DC8 OLR1-203ENST00000432556 950 ntTSL 2 BASIC15.08■□□□□ 0
ECHDC3Q96DC8 AC007969.1-201ENST00000433675 447 ntBASIC15.08■□□□□ 0
ECHDC3Q96DC8 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC15.08■□□□□ 0
ECHDC3Q96DC8 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC15.08■□□□□ 0
ECHDC3Q96DC8 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC15.08■□□□□ 0
ECHDC3Q96DC8 HNRNPA1P48-202ENST00000565308 961 ntBASIC15.08■□□□□ 0
ECHDC3Q96DC8 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
ECHDC3Q96DC8 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC15.08■□□□□ 0
ECHDC3Q96DC8 TECR-220ENST00000600083 1204 ntTSL 2 BASIC15.08■□□□□ 0
ECHDC3Q96DC8 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
ECHDC3Q96DC8 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
ECHDC3Q96DC8 TUBB1P2-201ENST00000422712 1306 ntBASIC15.08■□□□□ 0
ECHDC3Q96DC8 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC15.08■□□□□ 0
ECHDC3Q96DC8 TUBB1P1-201ENST00000503144 1300 ntBASIC15.08■□□□□ 0
ECHDC3Q96DC8 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC15.08■□□□□ 0
ECHDC3Q96DC8 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC15.08■□□□□ 0
ECHDC3Q96DC8 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC15.08■□□□□ 0
ECHDC3Q96DC8 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
ECHDC3Q96DC8 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC15.08■□□□□ 0
ECHDC3Q96DC8 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
ECHDC3Q96DC8 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC15.08■□□□□ 0
ECHDC3Q96DC8 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.08■□□□□ 0
ECHDC3Q96DC8 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
ECHDC3Q96DC8 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC15.07■□□□□ 0
ECHDC3Q96DC8 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.07■□□□□ 0
ECHDC3Q96DC8 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 AC144831.1-201ENST00000573312 2656 ntBASIC15.07■□□□□ 0
ECHDC3Q96DC8 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 GPI-205ENST00000586425 1799 ntTSL 5 BASIC15.07■□□□□ 0
ECHDC3Q96DC8 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
ECHDC3Q96DC8 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC15.07■□□□□ 0
ECHDC3Q96DC8 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC15.07■□□□□ 0
ECHDC3Q96DC8 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 AC004945.1-201ENST00000416738 983 ntBASIC15.07■□□□□ 0
ECHDC3Q96DC8 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC15.07■□□□□ 0
ECHDC3Q96DC8 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC15.07■□□□□ 0
ECHDC3Q96DC8 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC15.07■□□□□ 0
ECHDC3Q96DC8 ZACNP1-201ENST00000612259 710 ntBASIC15.07■□□□□ 0
ECHDC3Q96DC8 AL033527.4-201ENST00000641026 673 ntBASIC15.07■□□□□ 0
ECHDC3Q96DC8 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.07■□□□□ 0
ECHDC3Q96DC8 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.07■□□□□ 0
ECHDC3Q96DC8 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.07■□□□□ 0
ECHDC3Q96DC8 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC15.07■□□□□ 0
ECHDC3Q96DC8 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.07■□□□□ 0
ECHDC3Q96DC8 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC15.07■□□□□ 0
ECHDC3Q96DC8 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
ECHDC3Q96DC8 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
ECHDC3Q96DC8 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
ECHDC3Q96DC8 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
ECHDC3Q96DC8 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.06■□□□□ 0
ECHDC3Q96DC8 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC15.06■□□□□ 0
ECHDC3Q96DC8 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC15.06■□□□□ 0
ECHDC3Q96DC8 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
ECHDC3Q96DC8 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
ECHDC3Q96DC8 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC15.06■□□□□ 0
ECHDC3Q96DC8 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
ECHDC3Q96DC8 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
ECHDC3Q96DC8 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
ECHDC3Q96DC8 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
ECHDC3Q96DC8 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
ECHDC3Q96DC8 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
ECHDC3Q96DC8 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
ECHDC3Q96DC8 AL136309.1-201ENST00000403917 691 ntBASIC15.06■□□□□ 0
ECHDC3Q96DC8 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC15.06■□□□□ 0
ECHDC3Q96DC8 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC15.06■□□□□ 0
ECHDC3Q96DC8 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC15.06■□□□□ 0
ECHDC3Q96DC8 CHMP1AP1-201ENST00000445563 662 ntBASIC15.06■□□□□ 0
ECHDC3Q96DC8 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC15.06■□□□□ 0
ECHDC3Q96DC8 AC010328.2-201ENST00000597698 1111 ntBASIC15.06■□□□□ 0
ECHDC3Q96DC8 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC15.06■□□□□ 0
ECHDC3Q96DC8 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
ECHDC3Q96DC8 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
ECHDC3Q96DC8 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms