Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 LST1-205ENST00000376089 680 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 LST1-206ENST00000376090 689 ntTSL 2 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 LST1-208ENST00000376093 648 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 LST1-209ENST00000376096 565 ntTSL 2 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 LST1-210ENST00000376099 610 ntTSL 2 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 LST1-212ENST00000396101 459 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 LST1-214ENST00000418507 726 ntTSL 2 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 AL353705.2-201ENST00000428243 662 ntBASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 GPS2P2-201ENST00000430745 888 ntBASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 LST1-217ENST00000438075 764 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 SPDYE14P-201ENST00000442619 822 ntBASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 EEF1DP4-201ENST00000446006 880 ntBASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 AL512638.1-201ENST00000457493 794 ntBASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 AC069120.2-201ENST00000524091 540 ntBASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 Metazoa_SRP.12-201ENST00000553249 268 ntBASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 DUT-210ENST00000559935 569 ntTSL 3 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 AC003101.2-201ENST00000612557 442 ntBASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 AC018529.1-201ENST00000613063 361 ntBASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 AC084364.1-201ENST00000551967 1556 ntBASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 AC093214.1-201ENST00000511688 1107 ntBASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 RARRES2P9-201ENST00000565168 469 ntBASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 RAB34-224ENST00000636513 888 ntTSL 5 BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC14.22□□□□□ -0.13
DEPDC4Q8N2C3 SULT1A1-211ENST00000569554 1578 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms