Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 AC243960.2-201ENST00000600996 747 ntBASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
CCDC144BQ3MJ40 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC17.58■□□□□ 0.41
CCDC144BQ3MJ40 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC144BQ3MJ40 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC144BQ3MJ40 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC17.58■□□□□ 0.41
CCDC144BQ3MJ40 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC17.58■□□□□ 0.41
CCDC144BQ3MJ40 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC144BQ3MJ40 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC144BQ3MJ40 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 SUN1-204ENST00000403868 978 ntTSL 2 BASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 OLR1-203ENST00000432556 950 ntTSL 2 BASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 ZNF767P-206ENST00000513792 565 ntBASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 MIR3615-201ENST00000581999 87 ntBASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 AC023024.2-201ENST00000623561 1993 ntBASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 AC041040.2-201ENST00000622926 2899 ntBASIC17.58■□□□□ 0.4
CCDC144BQ3MJ40 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
CCDC144BQ3MJ40 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC17.57■□□□□ 0.4
CCDC144BQ3MJ40 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CCDC144BQ3MJ40 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC144BQ3MJ40 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC144BQ3MJ40 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC144BQ3MJ40 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC144BQ3MJ40 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC17.57■□□□□ 0.4
CCDC144BQ3MJ40 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC144BQ3MJ40 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC144BQ3MJ40 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC144BQ3MJ40 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC17.57■□□□□ 0.4
CCDC144BQ3MJ40 POLL-206ENST00000370172 2308 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC144BQ3MJ40 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC144BQ3MJ40 MIR1247-201ENST00000408206 136 ntBASIC17.57■□□□□ 0.4
CCDC144BQ3MJ40 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC17.57■□□□□ 0.4
CCDC144BQ3MJ40 AHRR-211ENST00000515206 462 ntTSL 5 BASIC17.57■□□□□ 0.4
CCDC144BQ3MJ40 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC17.57■□□□□ 0.4
CCDC144BQ3MJ40 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC144BQ3MJ40 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms