Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC13.59□□□□□ -0.23
SCN1BQ07699 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
SCN1BQ07699 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
SCN1BQ07699 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC13.59□□□□□ -0.23
SCN1BQ07699 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC13.59□□□□□ -0.23
SCN1BQ07699 RAC2-202ENST00000401529 569 ntTSL 4 BASIC13.59□□□□□ -0.23
SCN1BQ07699 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC13.59□□□□□ -0.23
SCN1BQ07699 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC13.59□□□□□ -0.23
SCN1BQ07699 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC13.59□□□□□ -0.23
SCN1BQ07699 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC13.59□□□□□ -0.23
SCN1BQ07699 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC13.59□□□□□ -0.23
SCN1BQ07699 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC13.59□□□□□ -0.23
SCN1BQ07699 SPDYE11-202ENST00000450699 704 ntBASIC13.59□□□□□ -0.23
SCN1BQ07699 AC105233.2-201ENST00000523697 349 ntBASIC13.59□□□□□ -0.23
SCN1BQ07699 FAM86C2P-203ENST00000528684 1004 ntBASIC13.59□□□□□ -0.23
SCN1BQ07699 AF228730.5-201ENST00000530288 346 ntBASIC13.59□□□□□ -0.23
SCN1BQ07699 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
SCN1BQ07699 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
SCN1BQ07699 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC13.59□□□□□ -0.23
SCN1BQ07699 SPDYE9P-201ENST00000570642 692 ntBASIC13.59□□□□□ -0.23
SCN1BQ07699 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC13.59□□□□□ -0.23
SCN1BQ07699 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC13.59□□□□□ -0.23
SCN1BQ07699 SPDYE10P-202ENST00000612005 668 ntBASIC13.59□□□□□ -0.23
SCN1BQ07699 SPDYE8P-202ENST00000612377 668 ntBASIC13.59□□□□□ -0.23
SCN1BQ07699 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC13.59□□□□□ -0.23
SCN1BQ07699 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC13.59□□□□□ -0.23
SCN1BQ07699 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC13.59□□□□□ -0.23
SCN1BQ07699 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC13.59□□□□□ -0.23
SCN1BQ07699 AKAP8P1-201ENST00000434743 1349 ntBASIC13.59□□□□□ -0.23
SCN1BQ07699 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
SCN1BQ07699 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC13.59□□□□□ -0.23
SCN1BQ07699 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SCN1BQ07699 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
SCN1BQ07699 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC13.58□□□□□ -0.23
SCN1BQ07699 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC13.58□□□□□ -0.23
SCN1BQ07699 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
SCN1BQ07699 USP31-203ENST00000567975 2142 ntTSL 2 BASIC13.58□□□□□ -0.23
SCN1BQ07699 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
SCN1BQ07699 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC13.58□□□□□ -0.23
SCN1BQ07699 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.23
SCN1BQ07699 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
SCN1BQ07699 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
SCN1BQ07699 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
SCN1BQ07699 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13.58□□□□□ -0.24
SCN1BQ07699 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC13.58□□□□□ -0.24
SCN1BQ07699 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SCN1BQ07699 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
SCN1BQ07699 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SCN1BQ07699 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SCN1BQ07699 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC13.58□□□□□ -0.24
SCN1BQ07699 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SCN1BQ07699 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC13.58□□□□□ -0.24
SCN1BQ07699 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC13.58□□□□□ -0.24
SCN1BQ07699 AL355306.1-201ENST00000415580 579 ntBASIC13.58□□□□□ -0.24
SCN1BQ07699 GPX1P2-201ENST00000429271 606 ntBASIC13.58□□□□□ -0.24
SCN1BQ07699 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SCN1BQ07699 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC13.58□□□□□ -0.24
SCN1BQ07699 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC13.58□□□□□ -0.24
SCN1BQ07699 TIMM8BP1-201ENST00000452384 211 ntBASIC13.58□□□□□ -0.24
SCN1BQ07699 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC13.58□□□□□ -0.24
SCN1BQ07699 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC13.58□□□□□ -0.24
SCN1BQ07699 IGHV3-62-201ENST00000520057 340 ntBASIC13.58□□□□□ -0.24
SCN1BQ07699 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC13.58□□□□□ -0.24
SCN1BQ07699 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC13.58□□□□□ -0.24
SCN1BQ07699 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC13.58□□□□□ -0.24
SCN1BQ07699 AC040169.1-201ENST00000565382 521 ntBASIC13.58□□□□□ -0.24
SCN1BQ07699 IGHV3OR16-6-201ENST00000568775 360 ntBASIC13.58□□□□□ -0.24
SCN1BQ07699 PAM16-215ENST00000577031 548 ntTSL 4 BASIC13.58□□□□□ -0.24
SCN1BQ07699 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
SCN1BQ07699 AL591122.2-201ENST00000624125 1853 ntBASIC13.58□□□□□ -0.24
SCN1BQ07699 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
SCN1BQ07699 MAD2L1-201ENST00000296509 5468 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SCN1BQ07699 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SCN1BQ07699 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms