Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.78■□□□□ 0.12
COL4A4P53420 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC15.78■□□□□ 0.12
COL4A4P53420 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL4A4P53420 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL4A4P53420 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.78■□□□□ 0.12
COL4A4P53420 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL4A4P53420 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL4A4P53420 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
COL4A4P53420 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
COL4A4P53420 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL4A4P53420 AP003680.1-201ENST00000598970 3660 ntBASIC15.77■□□□□ 0.12
COL4A4P53420 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC15.77■□□□□ 0.12
COL4A4P53420 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC15.77■□□□□ 0.12
COL4A4P53420 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL4A4P53420 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC15.77■□□□□ 0.12
COL4A4P53420 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL4A4P53420 MBP-201ENST00000354542 575 ntTSL 2 BASIC15.77■□□□□ 0.12
COL4A4P53420 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC15.77■□□□□ 0.12
COL4A4P53420 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC15.77■□□□□ 0.12
COL4A4P53420 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC15.77■□□□□ 0.12
COL4A4P53420 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC15.77■□□□□ 0.12
COL4A4P53420 AC027237.1-201ENST00000560942 655 ntBASIC15.77■□□□□ 0.12
COL4A4P53420 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC15.77■□□□□ 0.12
COL4A4P53420 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC15.77■□□□□ 0.12
COL4A4P53420 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL4A4P53420 AC087392.5-201ENST00000612517 489 ntBASIC15.77■□□□□ 0.12
COL4A4P53420 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC15.77■□□□□ 0.12
COL4A4P53420 DDX5-235ENST00000630471 473 ntTSL 4 BASIC15.77■□□□□ 0.12
COL4A4P53420 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL4A4P53420 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
COL4A4P53420 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
COL4A4P53420 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC15.77■□□□□ 0.12
COL4A4P53420 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
COL4A4P53420 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
COL4A4P53420 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL4A4P53420 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC15.77■□□□□ 0.11
COL4A4P53420 TCAF2P1-201ENST00000291129 2421 ntBASIC15.77■□□□□ 0.11
COL4A4P53420 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.77■□□□□ 0.11
COL4A4P53420 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
COL4A4P53420 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC15.77■□□□□ 0.11
COL4A4P53420 AL137783.1-201ENST00000623494 1896 ntBASIC15.77■□□□□ 0.11
COL4A4P53420 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
COL4A4P53420 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
COL4A4P53420 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC15.77■□□□□ 0.11
COL4A4P53420 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC15.76■□□□□ 0.11
COL4A4P53420 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
COL4A4P53420 HIST2H2BA-201ENST00000412169 381 ntBASIC15.76■□□□□ 0.11
COL4A4P53420 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
COL4A4P53420 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
COL4A4P53420 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC15.76■□□□□ 0.11
COL4A4P53420 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC15.76■□□□□ 0.11
COL4A4P53420 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL4A4P53420 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL4A4P53420 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL4A4P53420 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC15.76■□□□□ 0.11
COL4A4P53420 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC15.76■□□□□ 0.11
COL4A4P53420 AC009145.4-201ENST00000625119 1294 ntBASIC15.76■□□□□ 0.11
COL4A4P53420 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC15.76■□□□□ 0.11
COL4A4P53420 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
COL4A4P53420 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL4A4P53420 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC15.76■□□□□ 0.11
COL4A4P53420 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL4A4P53420 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL4A4P53420 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL4A4P53420 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL4A4P53420 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL4A4P53420 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.76■□□□□ 0.11
COL4A4P53420 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
COL4A4P53420 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL4A4P53420 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.76■□□□□ 0.11
COL4A4P53420 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC15.76■□□□□ 0.11
COL4A4P53420 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL4A4P53420 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL4A4P53420 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL4A4P53420 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL4A4P53420 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL4A4P53420 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL4A4P53420 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
COL4A4P53420 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL4A4P53420 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.76■□□□□ 0.11
COL4A4P53420 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL4A4P53420 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL4A4P53420 SERF2-206ENST00000409291 807 ntTSL 3 BASIC15.76■□□□□ 0.11
COL4A4P53420 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL4A4P53420 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL4A4P53420 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.76■□□□□ 0.11
COL4A4P53420 BUD31-205ENST00000456893 512 ntTSL 5 BASIC15.76■□□□□ 0.11
COL4A4P53420 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
COL4A4P53420 AC130709.1-201ENST00000484779 1212 ntBASIC15.76■□□□□ 0.11
COL4A4P53420 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC15.76■□□□□ 0.11
COL4A4P53420 NEU3-207ENST00000534628 746 ntTSL 2 BASIC15.76■□□□□ 0.11
COL4A4P53420 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC15.76■□□□□ 0.11
COL4A4P53420 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL4A4P53420 DNM1P51-201ENST00000558149 522 ntBASIC15.76■□□□□ 0.11
COL4A4P53420 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
COL4A4P53420 AP003392.6-201ENST00000607709 325 ntBASIC15.76■□□□□ 0.11
COL4A4P53420 FO393412.1-201ENST00000619841 382 ntBASIC15.76■□□□□ 0.11
COL4A4P53420 AC133540.1-201ENST00000620845 1019 ntBASIC15.76■□□□□ 0.11
COL4A4P53420 AC092299.1-201ENST00000632679 757 ntBASIC15.76■□□□□ 0.11
COL4A4P53420 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms