Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIG3P49916 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.05■□□□□ 0.16
LIG3P49916 CALY-203ENST00000368558 825 ntTSL 5 BASIC16.05■□□□□ 0.16
LIG3P49916 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.05■□□□□ 0.16
LIG3P49916 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.05■□□□□ 0.16
LIG3P49916 HAUS4P1-201ENST00000406739 1145 ntBASIC16.05■□□□□ 0.16
LIG3P49916 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LIG3P49916 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC16.05■□□□□ 0.16
LIG3P49916 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LIG3P49916 OARD1-208ENST00000469104 704 ntTSL 2 BASIC16.05■□□□□ 0.16
LIG3P49916 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LIG3P49916 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIG3P49916 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.05■□□□□ 0.16
LIG3P49916 SSH2-210ENST00000582084 560 ntTSL 3 BASIC16.05■□□□□ 0.16
LIG3P49916 LINC02560-201ENST00000596379 459 ntBASIC16.05■□□□□ 0.16
LIG3P49916 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC16.05■□□□□ 0.16
LIG3P49916 HFE2-206ENST00000634927 506 ntTSL 4 BASIC16.05■□□□□ 0.16
LIG3P49916 INTS4P1-203ENST00000641008 3683 ntBASIC16.05■□□□□ 0.16
LIG3P49916 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIG3P49916 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LIG3P49916 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIG3P49916 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
LIG3P49916 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC16.05■□□□□ 0.16
LIG3P49916 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
LIG3P49916 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIG3P49916 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
LIG3P49916 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LIG3P49916 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIG3P49916 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
LIG3P49916 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIG3P49916 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIG3P49916 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIG3P49916 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.05■□□□□ 0.16
LIG3P49916 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
LIG3P49916 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIG3P49916 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC16.05■□□□□ 0.16
LIG3P49916 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC16.05■□□□□ 0.16
LIG3P49916 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC16.04■□□□□ 0.16
LIG3P49916 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
LIG3P49916 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC16.04■□□□□ 0.16
LIG3P49916 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
LIG3P49916 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LIG3P49916 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
LIG3P49916 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
LIG3P49916 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LIG3P49916 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC16.04■□□□□ 0.16
LIG3P49916 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LIG3P49916 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
LIG3P49916 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
LIG3P49916 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LIG3P49916 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
LIG3P49916 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LIG3P49916 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LIG3P49916 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC16.04■□□□□ 0.16
LIG3P49916 FAM207CP-201ENST00000443486 507 ntBASIC16.04■□□□□ 0.16
LIG3P49916 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC16.04■□□□□ 0.16
LIG3P49916 LHX6-205ENST00000464484 666 ntTSL 2 BASIC16.04■□□□□ 0.16
LIG3P49916 STOM-203ENST00000538954 1257 ntTSL 5 BASIC16.04■□□□□ 0.16
LIG3P49916 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC16.04■□□□□ 0.16
LIG3P49916 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
LIG3P49916 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LIG3P49916 AC008738.7-201ENST00000609744 511 ntBASIC16.04■□□□□ 0.16
LIG3P49916 MIR6069-201ENST00000620069 79 ntBASIC16.04■□□□□ 0.16
LIG3P49916 AC008761.3-201ENST00000624803 892 ntBASIC16.04■□□□□ 0.16
LIG3P49916 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LIG3P49916 ADAMTS7P1-201ENST00000613213 4793 ntBASIC16.04■□□□□ 0.16
LIG3P49916 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
LIG3P49916 TCAF1P1-201ENST00000414990 2232 ntBASIC16.04■□□□□ 0.16
LIG3P49916 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LIG3P49916 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LIG3P49916 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LIG3P49916 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
LIG3P49916 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LIG3P49916 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
LIG3P49916 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
LIG3P49916 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LIG3P49916 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
LIG3P49916 BX640514.1-201ENST00000583223 1918 ntBASIC16.04■□□□□ 0.16
LIG3P49916 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIG3P49916 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC16.03■□□□□ 0.16
LIG3P49916 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
LIG3P49916 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIG3P49916 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
LIG3P49916 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIG3P49916 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LIG3P49916 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC16.03■□□□□ 0.16
LIG3P49916 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
LIG3P49916 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIG3P49916 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
LIG3P49916 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIG3P49916 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC16.03■□□□□ 0.16
LIG3P49916 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIG3P49916 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIG3P49916 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
LIG3P49916 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
LIG3P49916 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC16.03■□□□□ 0.16
LIG3P49916 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIG3P49916 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIG3P49916 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LIG3P49916 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms