Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SOCS2P1-201ENST00000417727 557 ntBASIC14.33□□□□□ -0.12
SOX3P41225 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SOX3P41225 AL162726.2-201ENST00000438986 1017 ntBASIC14.33□□□□□ -0.12
SOX3P41225 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC14.33□□□□□ -0.12
SOX3P41225 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC14.33□□□□□ -0.12
SOX3P41225 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SOX3P41225 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.33□□□□□ -0.12
SOX3P41225 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.33□□□□□ -0.12
SOX3P41225 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.33□□□□□ -0.12
SOX3P41225 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
SOX3P41225 AC124283.3-201ENST00000570869 594 ntBASIC14.33□□□□□ -0.12
SOX3P41225 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.33□□□□□ -0.12
SOX3P41225 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.33□□□□□ -0.12
SOX3P41225 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
SOX3P41225 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SOX3P41225 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.33□□□□□ -0.12
SOX3P41225 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
SOX3P41225 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SOX3P41225 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
SOX3P41225 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SOX3P41225 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SOX3P41225 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.33□□□□□ -0.12
SOX3P41225 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.33□□□□□ -0.12
SOX3P41225 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.33□□□□□ -0.12
SOX3P41225 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
SOX3P41225 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SOX3P41225 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
SOX3P41225 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
SOX3P41225 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
SOX3P41225 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.32□□□□□ -0.12
SOX3P41225 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
SOX3P41225 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.32□□□□□ -0.12
SOX3P41225 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.32□□□□□ -0.12
SOX3P41225 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC14.32□□□□□ -0.12
SOX3P41225 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.32□□□□□ -0.12
SOX3P41225 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
SOX3P41225 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
SOX3P41225 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.32□□□□□ -0.12
SOX3P41225 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
SOX3P41225 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.32□□□□□ -0.12
SOX3P41225 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
SOX3P41225 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 AC007389.4-201ENST00000454674 793 ntBASIC14.32□□□□□ -0.12
SOX3P41225 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.32□□□□□ -0.12
SOX3P41225 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC14.32□□□□□ -0.12
SOX3P41225 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 AC010319.3-201ENST00000597028 470 ntBASIC14.32□□□□□ -0.12
SOX3P41225 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
SOX3P41225 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
SOX3P41225 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.32□□□□□ -0.12
SOX3P41225 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC14.32□□□□□ -0.12
SOX3P41225 KRT8P44-201ENST00000441609 1350 ntBASIC14.32□□□□□ -0.12
SOX3P41225 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC14.32□□□□□ -0.12
SOX3P41225 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
SOX3P41225 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC14.32□□□□□ -0.12
SOX3P41225 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX3P41225 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.31□□□□□ -0.12
SOX3P41225 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX3P41225 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.31□□□□□ -0.12
SOX3P41225 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SOX3P41225 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX3P41225 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX3P41225 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX3P41225 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SOX3P41225 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX3P41225 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
SOX3P41225 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
SOX3P41225 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX3P41225 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
SOX3P41225 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.31□□□□□ -0.12
SOX3P41225 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC14.31□□□□□ -0.12
SOX3P41225 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms