Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 IGHV3OR16-6-201ENST00000568775 360 ntBASIC14.53□□□□□ -0.08
MSX2P35548 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC14.53□□□□□ -0.08
MSX2P35548 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC14.53□□□□□ -0.08
MSX2P35548 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
MSX2P35548 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC14.53□□□□□ -0.08
MSX2P35548 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
MSX2P35548 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.53□□□□□ -0.08
MSX2P35548 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.08
MSX2P35548 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
MSX2P35548 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
MSX2P35548 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC14.52□□□□□ -0.08
MSX2P35548 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC14.52□□□□□ -0.08
MSX2P35548 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
MSX2P35548 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
MSX2P35548 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
MSX2P35548 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MSX2P35548 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MSX2P35548 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
MSX2P35548 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
MSX2P35548 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
MSX2P35548 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MSX2P35548 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC14.52□□□□□ -0.09
MSX2P35548 TPM4P1-201ENST00000436100 807 ntBASIC14.52□□□□□ -0.09
MSX2P35548 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC14.52□□□□□ -0.09
MSX2P35548 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC14.52□□□□□ -0.09
MSX2P35548 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC14.52□□□□□ -0.09
MSX2P35548 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC14.52□□□□□ -0.09
MSX2P35548 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
MSX2P35548 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC14.52□□□□□ -0.09
MSX2P35548 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC14.52□□□□□ -0.09
MSX2P35548 AP001005.1-201ENST00000571755 1248 ntBASIC14.52□□□□□ -0.09
MSX2P35548 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC14.52□□□□□ -0.09
MSX2P35548 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC14.52□□□□□ -0.09
MSX2P35548 AC104692.2-201ENST00000603054 253 ntBASIC14.52□□□□□ -0.09
MSX2P35548 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MSX2P35548 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
MSX2P35548 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC14.52□□□□□ -0.09
MSX2P35548 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MSX2P35548 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
MSX2P35548 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MSX2P35548 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.09
MSX2P35548 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
MSX2P35548 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
MSX2P35548 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
MSX2P35548 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.52□□□□□ -0.09
MSX2P35548 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
MSX2P35548 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.52□□□□□ -0.09
MSX2P35548 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MSX2P35548 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
MSX2P35548 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.52□□□□□ -0.09
MSX2P35548 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MSX2P35548 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MSX2P35548 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.09
MSX2P35548 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
MSX2P35548 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
MSX2P35548 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
MSX2P35548 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14.51□□□□□ -0.09
MSX2P35548 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX2P35548 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX2P35548 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
MSX2P35548 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX2P35548 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
MSX2P35548 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX2P35548 CICP16-201ENST00000502609 2813 ntBASIC14.51□□□□□ -0.09
MSX2P35548 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX2P35548 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.09
MSX2P35548 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
MSX2P35548 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
MSX2P35548 IPPK-202ENST00000375522 882 ntTSL 3 BASIC14.51□□□□□ -0.09
MSX2P35548 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX2P35548 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC14.51□□□□□ -0.09
MSX2P35548 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.09
MSX2P35548 KRT18P64-201ENST00000434946 1219 ntBASIC14.51□□□□□ -0.09
MSX2P35548 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC14.51□□□□□ -0.09
MSX2P35548 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC14.51□□□□□ -0.09
MSX2P35548 RNF34-208ENST00000555076 593 ntTSL 3 BASIC14.51□□□□□ -0.09
MSX2P35548 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC14.51□□□□□ -0.09
MSX2P35548 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC14.51□□□□□ -0.09
MSX2P35548 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
MSX2P35548 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.51□□□□□ -0.09
MSX2P35548 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.51□□□□□ -0.09
MSX2P35548 AC091812.2-201ENST00000619081 385 ntBASIC14.51□□□□□ -0.09
MSX2P35548 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX2P35548 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX2P35548 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX2P35548 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
MSX2P35548 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC14.51□□□□□ -0.09
MSX2P35548 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC14.51□□□□□ -0.09
MSX2P35548 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX2P35548 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX2P35548 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MSX2P35548 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms